Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3182 132 7e-26 seq5361 129 8e-25 >seq3182 Length=3053334 Score = 132 bits (146), Expect = 7e-26 Identities = 133/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661 || || ||||| | |||||| |||||||| || |||||||||||||| || || | || Sbjct 791468 TGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGCTCA 791409 Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721 || || || || || |||||||| ||||| | ||| || ||||| || |||| ||||| Sbjct 791408 TTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCAAAT 791349 Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC 39774 || ||||| || |||||||| || || || ||||| ||||| | || ||| || Sbjct 791348 GAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGCAACCACTCGCTCACC 791296 Score = 132 bits (146), Expect = 7e-26 Identities = 133/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661 || || ||||| | |||||| |||||||| || |||||||||||||| || || | || Sbjct 884683 TGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGCTCA 884624 Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721 || || || || || |||||||| ||||| | ||| || ||||| || |||| ||||| Sbjct 884623 TTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCAAAT 884564 Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC 39774 || ||||| || |||||||| || || || ||||| ||||| | || ||| || Sbjct 884563 GAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGCAACCACTCGCTCACC 884511 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCTTGT--GACATAACTCCCATTT 39326 ||||||||||| |||||| | || ||||||| | || |||||||| ||||| Sbjct 792138 TTTAAAAGTCAGCATCTAGCGTGAAGGTATTATCTGTGGTGCCAGACATAACACCCATCC 792079 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 ||||||| || || || ||||||||||| || || || ||||| |||| || || || | Sbjct 792078 TTTGGTACTCTCCTACACGTTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCT 792019 Query 39387 CCATGAAATCAAACGGATT 39405 ||||||| ||||| || || Sbjct 792018 CCATGAAGTCAAAGGGGTT 792000 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCTTGT--GACATAACTCCCATTT 39326 ||||||||||| |||||| | || ||||||| | || |||||||| ||||| Sbjct 885330 TTTAAAAGTCAGCATCTAGCGTGAAGGTATTATCTGTGGTGCCAGACATAACACCCATCC 885271 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 ||||||| || || || ||||||||||| || || || ||||| |||| || || || | Sbjct 885270 TTTGGTACTCTCCTACACGTTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCT 885211 Query 39387 CCATGAAATCAAACGGATT 39405 ||||||| ||||| || || Sbjct 885210 CCATGAAGTCAAAGGGGTT 885192 >seq5361 Length=1636355 Score = 129 bits (142), Expect = 8e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||||||||| || | || || ||| | | |||||||||||| ||||| | ||| || Sbjct 1221673 TCATCTCTACTGATAAGCTCATTGGAATAGGAGAGTCCAGGCATCAGACCCCTCTTCTTC 1221614 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| | ||||||||||| || ||||| || |||||||| || |||||||||||||| Sbjct 1221613 AGCCAGTAGATGGCAGCAAAGGACCCAGAGAAAAAGATGCCCTCCACTGCTGCAAATGCC 1221554 Query 39761 ACAAGTCTCTCTCC 39774 ||||||||||| || Sbjct 1221553 ACAAGTCTCTCCCC 1221540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686849425320600