Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2049 104 2e-17 seq3182 93.3 3e-14 seq1974 86.0 5e-12 >seq2049 Length=84106 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || || ||| | | || ||||||||||| || | ||||| |||| Sbjct 10181 TGATGGCGCTGCCCCCGTGCCATGCGCTGTGCCAGTTTTACGTGTGTGACGGTGAGCTGT 10122 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| |||| || |||| || |||||||| || || || || || ||||| || | Sbjct 10121 CGTGCCAACTGTACCAGCGATCGGGAGACATGGGTCTGGGCGTGCCCTTCAACATCGCCA 10062 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || |||||||| || ||||| || ||| Sbjct 10061 GCTACGCCCTGCTCACCTACATGATCGCCCAC 10030 >seq3182 Length=3053334 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||||| || || || || || |||||||||||||| |||||||| |||||| |||| Sbjct 790335 TTTGTCGTTTTCCCTATCCAGTACCATGACATATGGCAGATGTACAAGAAAGCAGAGGCC 790394 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTT 43788 || || |||||||||||||| || | ||| Sbjct 790395 TCTTTCTGGACAGCAGAAGAGGTGGGTTT 790423 >seq1974 Length=1508108 Score = 86.0 bits (94), Expect = 5e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 77434 ACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTG 77493 ||| |||||||||||| ||||||| ||||||| ||||||||||| || |||| ||| Sbjct 1020544 ACCGTTGATGGTGAACTTGCTGTCAGTGTAGAGCACCAGCTTCTTAATCTTGTGGTCCCT 1020485 Query 77494 AGCTTGTTGCAGTGCTTTGGATGCAGCCTG 77523 ||||||| ||| ||||| | |||||||| Sbjct 1020484 GGCTTGTTCCAGAGCTTTACAGGCAGCCTG 1020455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397422503774575