Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_027988.2 Length=47636 Score E Sequences producing significant alignments: (Bits) Value seq204 338 2e-88 seq201 114 4e-21 >seq204 Length=1493 Score = 338 bits (374), Expect = 2e-88 Identities = 881/1319 (67%), Gaps = 42/1319 (3%) Strand=Plus/Plus Query 4441 CAGCGTCGTGGTAAAGTGGATGAATGGAAAGAGCTTCGTAACTACATCTTTGCAACAGAT 4500 || ||||||| || | || || ||||| || | ||||||||| ||||||| || || Sbjct 161 CAACGTCGTGAAAAGATTGAAGAGTGGAAGGAATTACGTAACTACGTCTTTGCCACTGAC 220 Query 4501 ACAACCACTACAACTAACGCATCTCTCCCTTGGAAGAACTCTACAACCATTCCAAAGATT 4560 || || || ||| ||||| | | |||||||||||||||||||| | || ||| || Sbjct 221 ACCACAACCACAGCTAACCAGACATTGCCTTGGAAGAACTCTACAACACTCCCTAAGCTT 280 Query 4561 TGTCAGATTCGTGATAACTTACACTCCAACTATGTTAGTGCACTGTTCCCTAATGATGAT 4620 || || || || || ||| | ||||||||||| | ||| || ||||||||||| || Sbjct 281 TGCCAAATACGAGACAACCTGCACTCCAACTACTTGTCTGCCCTCTTCCCTAATGACGAC 340 Query 4621 TGGATGCAATGGGTAGCTTATTCTCAGGATGATG---CTAAGAAATCTAAAGCCGACGCA 4677 ||| ||| |||| || |||||| |||| |||| | ||||| ||| ||| || Sbjct 341 TGGTTGCGTTGGGAGGCATATTCTAAGGACGATGGCACCAAGAAGA--AAACCCGT-GCT 397 Query 4678 ATCAAGGCATATCTGTCTAACAAAACACGAGAGGGACATTTCAGTGCCGAACTCAGCAAA 4737 || | || || || |||||||| || ||||| || ||| || | || | ||| Sbjct 398 ATTGAAGCCTACATGAAGAACAAAACTCGTGAGGGCCACTTCCGTACAGAGATGTCTAAA 457 Query 4738 TTGTTATATGACTATATTGACTATGGCAATGCGTTTGCAACAGTC-ACGTATGAA-TCAA 4795 |||| | || ||||| |||||||| || || || || || || || | | |||| Sbjct 458 CTGTTGTTAGATTATATCGACTATGGTAACGCATTCGCTACTGTAGACTTCTCTGCTCAA 517 Query 4796 -ACAGCCATGAAGTGGAT---GGTGAAATCATTCCTGAGTACATCGGTCCTCGGGTCTAT 4851 || | | || || || || || ||| | |||||| || || || | Sbjct 518 TACCGAGAAGACCCAGACACAGGCCAACGTGTTGCTGGTTTCATCGGACCCCGTGTGTTC 577 Query 4852 CGCATCAGCCCTATGGATATTGTTTTTAACCC-ACTAGCCGCTACGTTCAAAGAATCCTT 4910 || || || |||| ||||| ||| |||| ||| ||| | || || | || || || Sbjct 578 CGTATTTCACCGTTGGACATTGTGTTTGACCCCACT-GCCTCAACCTTTGATGAGTCATT 636 Query 4911 CAAGATTATTCGCTCTGTACGCACTTTAGGTGACTTAGCTAAACTAGCTAAG-ACTGACC 4969 ||||||| | || | | ||| | ||||| || || | || || | || || Sbjct 637 CAAGATTGTACGAAGTATCAAAACTGTTGGTGAGATACAGAAGATGGCAGAGGAGTGGCC 696 Query 4970 CATCACAAGCCTTCTGGGAAGAAGCTGTGAAACGTAGACAAGATATGCGTA---TCCAGT 5026 | || | ||||||| | || | ||||| | |||| | | ||| Sbjct 697 TAACA-ATGCCTTCTATGCTTCGTATGCGGCCCGTAGGGCAACTATGAGGAAGGTCCTAG 755 Query 5027 GTGGAGGTTATTCTGTAGAAGATTTTGACAAGTATGAAGG--ATTCCAAGCGGATGGCTT 5084 |||| |||| ||||||| || || ||| ||| || |||| | ||| || || Sbjct 756 GTGG---TTATAGCATAGAAGACTTCGATAAGGCTGAGGGCTATTCT--GTGGACGGATT 810 Query 5085 TGGAAACATGTATGATTATTACATGTCTGATTACGTGGAAATCTTAGAATTCTACGGAGA 5144 ||| ||| | || || || ||| ||||| || || || || | || ||||| || || Sbjct 811 TGGCAACCTCTACGAATACTACCAATCTGACTATGTAGAGATACTTGAGTTCTATGGCGA 870 Query 5145 TTGGTACGACGCAGAAAAGAACGAACTCCATGAGAAC--ACTCATATGGTTGTTGTTGAC 5202 | || | |||||| ||||| | ||| | ||||| | || |||| Sbjct 871 CTACCACAGCACAGAAACTGGTGAACTGAAGTCAAACGTAGTCATAACAATCTT--TGAC 928 Query 5203 CGT----ATGAAGATGATTCATGAAGAGCCTATTAAGAACTGGTTTGGTTCTGCCCCTCT 5258 ||| ||| || || ||||||||||| ||| | |||||| ||||| | Sbjct 929 CGTTGCCATGTAG----TTAGGGAAGAGCCTATCAAGTCTTACTTTGGTAAAGCCCCCTT 984 Query 5259 CTACCACGTAGGCTGGCGTTTCCGTACAGACAATCTGTGGGCTATGGGTCCTCTTGATAA 5318 | || || || |||||| || | || || |||||||||||||| ||| | || || Sbjct 985 ATGTCATGTTGGGTGGCGTACACGACCTGATAACCTGTGGGCTATGGGACCTTTGGACAA 1044 Query 5319 CCTAGTAGGTATGCAATACCGAATGGACCATTTAGAGAACCTTAAAGCGGATGCTATGGA 5378 | | || |||||||||||||| || ||||| | |||||||||||||| || || ||||| Sbjct 1045 CTTGGTTGGTATGCAATACCGTATTGACCACCTTGAGAACCTTAAAGCTGACGCAATGGA 1104 Query 5379 CCTCTGTGTGCATCCACCTCTGTTGATTCAAGGGGACGTAGAAGAGTTTGAATGGGGTCC 5438 | | |||||||| ||||| || | ||| | || || ||||||||||||| |||||| || Sbjct 1105 CTTGTGTGTGCACCCACCGCTTGTCATTAAGGGTGAGGTAGAAGAGTTTGTATGGGGCCC 1164 Query 5439 CGGTGTAGAGATTCACGTTGATGAAAGCGGAAGCGTCTCAGAGCTTGGTAAGAACCTGAA 5498 |||| ||||| ||| || || | || ||| | ||||| || ||||||||||| Sbjct 1165 AGGTGCTGAGATACACACCGACGAGAATGGTGACGTAGCTGAGCTAGGCAAGAACCTGAA 1224 Query 5499 TAGCATCATGCAAGCTAACAATGAAATTCAGATGT-TAGAACAGCGTATGGAGATGTATG 5557 |||| || ||| || |||||| | | | | ||| | ||||| |||| Sbjct 1225 CGGCATTATAGCAGCGTCTAACGAAATT-GGCTCTCTTGAAGAAAAAATGGAACTGTACT 1283 Query 5558 CTGGTGCTCCTCGTGAAGCTATGGGCATTCGTTCTCCGGGCGAGAAGACAGCTTTCGAAG 5617 |||| || || ||||| |||||||| ||||| | | || ||||||||||| ||||||| Sbjct 1284 CTGGCGCACCACGTGAGGCTATGGGGATTCGCACAGCAGGTGAGAAGACAGCCTTCGAAG 1343 Query 5618 TACAACAGATGCAGAACGCTGCTGGACGCATCTTCCAAGAGAAGATTAATCAG-TTTGAG 5676 | || | |||| || |||||||| || ||||| |||||||| ||| | ||| |||||| Sbjct 1344 TTCAGTCGTTGCAAAATGCTGCTGGCCGTATCTTTCAAGAGAAAATT-ACCAGCTTTGAG 1402 Query 5677 ACTGAACTGTTGGAGCCTGTTCTGAACTCTATGTTGGAGGTATCTAAGCGTAACATGGA 5735 | ||| || | ||||| ||||| | ||| | ||||| || | || || ||||| Sbjct 1403 ATTGAGCTCCTAGAGCCCACACTGAATGCCATGCTAGAGGTCTCCAGACGCAATATGGA 1461 >seq201 Length=1488 Score = 114 bits (126), Expect = 4e-21 Identities = 289/437 (66%), Gaps = 12/437 (3%) Strand=Plus/Plus Query 33803 ACATCCTTAAACGCAGCTACATAATTGTCCAACGTAGTTCCTGTCAATCCCGGAGCGCTA 33862 |||||| | || | | ||||| ||||||| ||||| |||| || || || |||||| Sbjct 722 ACATCCCTGAATACCTCCACATACTTGTCCAGTGTAGTGCCTGACACCCCAGGCGCGCTA 781 Query 33863 TTAACCTCTAAGACAAAATACTTGTCCTGTTTCTCGTTCCAGATGATGTCTACAGCACCG 33922 || || || | ||| || | | || ||| |||| | | | || ||||||||| Sbjct 782 TTCACTTCAAGTACATAAGCTCTCTGCTCTTTGGCGTTATACACCACATCCACAGCACCG 841 Query 33923 AAATCCAGACCAAGTGATTGTACAGCGAGAATTGCTTGCTCAGAAGCACGTTCATCAGCT 33982 || || || ||||| | | ||||| || ||||||| ||| || || | Sbjct 842 AAGTCTAGTCCAAGAGCCTCAACAGCAGCAAGGGCTTGCTTCT---CACAGTCCTCTGGC 898 Query 33983 A---CAACGCCTTCACGCATAAAGATGAATCCGTTGTCGTGGTTACGTACTTTCCAATTG 34039 | | | | ||||| | ||||||||||||||||||||||| || || |||||||| Sbjct 899 ATGTCGAAGTCTTCAATCTGGAAGATGAATCCGTTGTCGTGGTTGCGCACCTTCCAATTC 958 Query 34040 ACATCTTCATCAGCTACATCTTTGTTACGTGCCTTACGTTGAACATCAATCACTTTCCCC 34099 || |||||||||| ||||| |||||||| || || | ||||| || || Sbjct 959 ACTTCTTCATCAGGAACATCAAAACGTCGTGCCTTTCGCTGCTTGTGAATCATCTTGCCG 1018 Query 34100 ATGAAGACATGATAACGATATTC---ATGCTTCTTAGGAATGTATGTTACATAGAGAGGA 34156 | || ||||| ||||||||| |||||||| | | ||| || || || Sbjct 1019 TTTAACACATGCACACGATATTCGTTCTGCTTCTTGACATAGCGTGT---GTACAGCGGG 1075 Query 34157 GCTTTAACAAGTTCATCAACATTGTCAGCAATAACAATCCCAGCGCCGGAATGCCCACTA 34216 || || ||||| ||||| | || || ||||| | || ||| || ||| ||| | Sbjct 1076 GCCTTTACAAGCTCATCTTCGTTCTCGGCAATGATGATACCATTTCCACTATGGCCATTG 1135 Query 34217 AGGATAGTGCGACACAC 34233 |||| ||| || ||||| Sbjct 1136 AGGACAGTACGGCACAC 1152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152301092673540