Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30]
6,915 sequences; 807,711,962 total letters
Query= NC_027988.2
Length=47636
Score E
Sequences producing significant alignments: (Bits) Value
seq204 338 2e-88
seq201 114 4e-21
>seq204
Length=1493
Score = 338 bits (374), Expect = 2e-88
Identities = 881/1319 (67%), Gaps = 42/1319 (3%)
Strand=Plus/Plus
Query 4441 CAGCGTCGTGGTAAAGTGGATGAATGGAAAGAGCTTCGTAACTACATCTTTGCAACAGAT 4500
|| ||||||| || | || || ||||| || | ||||||||| ||||||| || ||
Sbjct 161 CAACGTCGTGAAAAGATTGAAGAGTGGAAGGAATTACGTAACTACGTCTTTGCCACTGAC 220
Query 4501 ACAACCACTACAACTAACGCATCTCTCCCTTGGAAGAACTCTACAACCATTCCAAAGATT 4560
|| || || ||| ||||| | | |||||||||||||||||||| | || ||| ||
Sbjct 221 ACCACAACCACAGCTAACCAGACATTGCCTTGGAAGAACTCTACAACACTCCCTAAGCTT 280
Query 4561 TGTCAGATTCGTGATAACTTACACTCCAACTATGTTAGTGCACTGTTCCCTAATGATGAT 4620
|| || || || || ||| | ||||||||||| | ||| || ||||||||||| ||
Sbjct 281 TGCCAAATACGAGACAACCTGCACTCCAACTACTTGTCTGCCCTCTTCCCTAATGACGAC 340
Query 4621 TGGATGCAATGGGTAGCTTATTCTCAGGATGATG---CTAAGAAATCTAAAGCCGACGCA 4677
||| ||| |||| || |||||| |||| |||| | ||||| ||| ||| ||
Sbjct 341 TGGTTGCGTTGGGAGGCATATTCTAAGGACGATGGCACCAAGAAGA--AAACCCGT-GCT 397
Query 4678 ATCAAGGCATATCTGTCTAACAAAACACGAGAGGGACATTTCAGTGCCGAACTCAGCAAA 4737
|| | || || || |||||||| || ||||| || ||| || | || | |||
Sbjct 398 ATTGAAGCCTACATGAAGAACAAAACTCGTGAGGGCCACTTCCGTACAGAGATGTCTAAA 457
Query 4738 TTGTTATATGACTATATTGACTATGGCAATGCGTTTGCAACAGTC-ACGTATGAA-TCAA 4795
|||| | || ||||| |||||||| || || || || || || || | | ||||
Sbjct 458 CTGTTGTTAGATTATATCGACTATGGTAACGCATTCGCTACTGTAGACTTCTCTGCTCAA 517
Query 4796 -ACAGCCATGAAGTGGAT---GGTGAAATCATTCCTGAGTACATCGGTCCTCGGGTCTAT 4851
|| | | || || || || || ||| | |||||| || || || |
Sbjct 518 TACCGAGAAGACCCAGACACAGGCCAACGTGTTGCTGGTTTCATCGGACCCCGTGTGTTC 577
Query 4852 CGCATCAGCCCTATGGATATTGTTTTTAACCC-ACTAGCCGCTACGTTCAAAGAATCCTT 4910
|| || || |||| ||||| ||| |||| ||| ||| | || || | || || ||
Sbjct 578 CGTATTTCACCGTTGGACATTGTGTTTGACCCCACT-GCCTCAACCTTTGATGAGTCATT 636
Query 4911 CAAGATTATTCGCTCTGTACGCACTTTAGGTGACTTAGCTAAACTAGCTAAG-ACTGACC 4969
||||||| | || | | ||| | ||||| || || | || || | || ||
Sbjct 637 CAAGATTGTACGAAGTATCAAAACTGTTGGTGAGATACAGAAGATGGCAGAGGAGTGGCC 696
Query 4970 CATCACAAGCCTTCTGGGAAGAAGCTGTGAAACGTAGACAAGATATGCGTA---TCCAGT 5026
| || | ||||||| | || | ||||| | |||| | | |||
Sbjct 697 TAACA-ATGCCTTCTATGCTTCGTATGCGGCCCGTAGGGCAACTATGAGGAAGGTCCTAG 755
Query 5027 GTGGAGGTTATTCTGTAGAAGATTTTGACAAGTATGAAGG--ATTCCAAGCGGATGGCTT 5084
|||| |||| ||||||| || || ||| ||| || |||| | ||| || ||
Sbjct 756 GTGG---TTATAGCATAGAAGACTTCGATAAGGCTGAGGGCTATTCT--GTGGACGGATT 810
Query 5085 TGGAAACATGTATGATTATTACATGTCTGATTACGTGGAAATCTTAGAATTCTACGGAGA 5144
||| ||| | || || || ||| ||||| || || || || | || ||||| || ||
Sbjct 811 TGGCAACCTCTACGAATACTACCAATCTGACTATGTAGAGATACTTGAGTTCTATGGCGA 870
Query 5145 TTGGTACGACGCAGAAAAGAACGAACTCCATGAGAAC--ACTCATATGGTTGTTGTTGAC 5202
| || | |||||| ||||| | ||| | ||||| | || ||||
Sbjct 871 CTACCACAGCACAGAAACTGGTGAACTGAAGTCAAACGTAGTCATAACAATCTT--TGAC 928
Query 5203 CGT----ATGAAGATGATTCATGAAGAGCCTATTAAGAACTGGTTTGGTTCTGCCCCTCT 5258
||| ||| || || ||||||||||| ||| | |||||| ||||| |
Sbjct 929 CGTTGCCATGTAG----TTAGGGAAGAGCCTATCAAGTCTTACTTTGGTAAAGCCCCCTT 984
Query 5259 CTACCACGTAGGCTGGCGTTTCCGTACAGACAATCTGTGGGCTATGGGTCCTCTTGATAA 5318
| || || || |||||| || | || || |||||||||||||| ||| | || ||
Sbjct 985 ATGTCATGTTGGGTGGCGTACACGACCTGATAACCTGTGGGCTATGGGACCTTTGGACAA 1044
Query 5319 CCTAGTAGGTATGCAATACCGAATGGACCATTTAGAGAACCTTAAAGCGGATGCTATGGA 5378
| | || |||||||||||||| || ||||| | |||||||||||||| || || |||||
Sbjct 1045 CTTGGTTGGTATGCAATACCGTATTGACCACCTTGAGAACCTTAAAGCTGACGCAATGGA 1104
Query 5379 CCTCTGTGTGCATCCACCTCTGTTGATTCAAGGGGACGTAGAAGAGTTTGAATGGGGTCC 5438
| | |||||||| ||||| || | ||| | || || ||||||||||||| |||||| ||
Sbjct 1105 CTTGTGTGTGCACCCACCGCTTGTCATTAAGGGTGAGGTAGAAGAGTTTGTATGGGGCCC 1164
Query 5439 CGGTGTAGAGATTCACGTTGATGAAAGCGGAAGCGTCTCAGAGCTTGGTAAGAACCTGAA 5498
|||| ||||| ||| || || | || ||| | ||||| || |||||||||||
Sbjct 1165 AGGTGCTGAGATACACACCGACGAGAATGGTGACGTAGCTGAGCTAGGCAAGAACCTGAA 1224
Query 5499 TAGCATCATGCAAGCTAACAATGAAATTCAGATGT-TAGAACAGCGTATGGAGATGTATG 5557
|||| || ||| || |||||| | | | | ||| | ||||| ||||
Sbjct 1225 CGGCATTATAGCAGCGTCTAACGAAATT-GGCTCTCTTGAAGAAAAAATGGAACTGTACT 1283
Query 5558 CTGGTGCTCCTCGTGAAGCTATGGGCATTCGTTCTCCGGGCGAGAAGACAGCTTTCGAAG 5617
|||| || || ||||| |||||||| ||||| | | || ||||||||||| |||||||
Sbjct 1284 CTGGCGCACCACGTGAGGCTATGGGGATTCGCACAGCAGGTGAGAAGACAGCCTTCGAAG 1343
Query 5618 TACAACAGATGCAGAACGCTGCTGGACGCATCTTCCAAGAGAAGATTAATCAG-TTTGAG 5676
| || | |||| || |||||||| || ||||| |||||||| ||| | ||| ||||||
Sbjct 1344 TTCAGTCGTTGCAAAATGCTGCTGGCCGTATCTTTCAAGAGAAAATT-ACCAGCTTTGAG 1402
Query 5677 ACTGAACTGTTGGAGCCTGTTCTGAACTCTATGTTGGAGGTATCTAAGCGTAACATGGA 5735
| ||| || | ||||| ||||| | ||| | ||||| || | || || |||||
Sbjct 1403 ATTGAGCTCCTAGAGCCCACACTGAATGCCATGCTAGAGGTCTCCAGACGCAATATGGA 1461
>seq201
Length=1488
Score = 114 bits (126), Expect = 4e-21
Identities = 289/437 (66%), Gaps = 12/437 (3%)
Strand=Plus/Plus
Query 33803 ACATCCTTAAACGCAGCTACATAATTGTCCAACGTAGTTCCTGTCAATCCCGGAGCGCTA 33862
|||||| | || | | ||||| ||||||| ||||| |||| || || || ||||||
Sbjct 722 ACATCCCTGAATACCTCCACATACTTGTCCAGTGTAGTGCCTGACACCCCAGGCGCGCTA 781
Query 33863 TTAACCTCTAAGACAAAATACTTGTCCTGTTTCTCGTTCCAGATGATGTCTACAGCACCG 33922
|| || || | ||| || | | || ||| |||| | | | || |||||||||
Sbjct 782 TTCACTTCAAGTACATAAGCTCTCTGCTCTTTGGCGTTATACACCACATCCACAGCACCG 841
Query 33923 AAATCCAGACCAAGTGATTGTACAGCGAGAATTGCTTGCTCAGAAGCACGTTCATCAGCT 33982
|| || || ||||| | | ||||| || ||||||| ||| || || |
Sbjct 842 AAGTCTAGTCCAAGAGCCTCAACAGCAGCAAGGGCTTGCTTCT---CACAGTCCTCTGGC 898
Query 33983 A---CAACGCCTTCACGCATAAAGATGAATCCGTTGTCGTGGTTACGTACTTTCCAATTG 34039
| | | | ||||| | ||||||||||||||||||||||| || || ||||||||
Sbjct 899 ATGTCGAAGTCTTCAATCTGGAAGATGAATCCGTTGTCGTGGTTGCGCACCTTCCAATTC 958
Query 34040 ACATCTTCATCAGCTACATCTTTGTTACGTGCCTTACGTTGAACATCAATCACTTTCCCC 34099
|| |||||||||| ||||| |||||||| || || | ||||| || ||
Sbjct 959 ACTTCTTCATCAGGAACATCAAAACGTCGTGCCTTTCGCTGCTTGTGAATCATCTTGCCG 1018
Query 34100 ATGAAGACATGATAACGATATTC---ATGCTTCTTAGGAATGTATGTTACATAGAGAGGA 34156
| || ||||| ||||||||| |||||||| | | ||| || || ||
Sbjct 1019 TTTAACACATGCACACGATATTCGTTCTGCTTCTTGACATAGCGTGT---GTACAGCGGG 1075
Query 34157 GCTTTAACAAGTTCATCAACATTGTCAGCAATAACAATCCCAGCGCCGGAATGCCCACTA 34216
|| || ||||| ||||| | || || ||||| | || ||| || ||| ||| |
Sbjct 1076 GCCTTTACAAGCTCATCTTCGTTCTCGGCAATGATGATACCATTTCCACTATGGCCATTG 1135
Query 34217 AGGATAGTGCGACACAC 34233
|||| ||| || |||||
Sbjct 1136 AGGACAGTACGGCACAC 1152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152301092673540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |