Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq1950 163 8e-36 >seq1950 Length=44673 Score = 163 bits (180), Expect = 8e-36 Identities = 206/280 (74%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 41184 ATCATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATG----CCAAGCGGCGGCGC 41239 ||||||||||| | || |||||||| ||| |||| || || || || ||||| Sbjct 24849 ATCATTGGCAATCTTGGTAACGATCCTGAA----GTTAAGTGTTTACCTAGTGGTGGCGC 24904 Query 41240 GGTTGCTAATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAA 41299 |||||||| | | | || ||| | ||||||||||| ||||| | ||| |||||| | Sbjct 24905 AGTTGCTAACTTTACGTTGGCAACATCAGAAAGCTGGAAAGATAAGAACACTGGCGAGCA 24964 Query 41300 GAAAGAACAAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAG 41359 |||||| |||| ||||||||||| |||| |||| || ||||| || |||||||| | Sbjct 24965 AAAAGAAAAAACAGAATGGCACCGTGTTGCTGTCTTTGGAAAGCTAGCTGAAATTGCCGG 25024 Query 41360 CGAATACCTGCGCAAAGG-TAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAAT 41418 |||||||| |||||||| | ||| || | |||||| || | ||| ||||||||||| Sbjct 25025 TGAATACCTACGCAAAGGCTCTCAA-GTTTACATTGAGGGTAAGTTGCAAACGCGTAAAT 25083 Query 41419 GGCAGGACCAGGCTGGCGTTGATCGCTACACCACTGAAAT 41458 |||| || | | ||| |||| ||||| || ||||| Sbjct 25084 GGCAAAACAAAGATGGTCAAGATCAGTACACTACAGAAAT 25123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133198661410440