Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1943 86.0 8e-12 >seq1943 Length=432286 Score = 86.0 bits (94), Expect = 8e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 ||||||||| ||||| || | ||| ||||| |||| ||| | ||| || || || Sbjct 423452 CTCATCCTTGCTGGTGTATTCAACAATCTCTGTGCATAGATTGCTGCACTTGATTGTGCC 423393 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 | |||| || || ||||| |||||| ||||| || ||||||||||| || || || Sbjct 423392 AAGGTTCTGCTGATTGCTCTTGCGGTTGCAGGCATCTTTATAGAGCATGTAAGGTGTGCC 423333 Query 111385 CGTCTCCGTCTGTGA 111399 |||||||||||| || Sbjct 423332 CGTCTCCGTCTGAGA 423318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627977714484000