Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3182 102 1e-16 seq1943 89.7 6e-13 >seq3182 Length=3053334 Score = 102 bits (112), Expect = 1e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || ||||| || | | ||| || ||||| ||||| || || Sbjct 791451 GGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGCTCATTGGAGAAAGTAAGGCC 791392 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| ||||||| |||||||| ||||||||| | ||||||||||||||| ||||| Sbjct 791391 AGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCAAATGAGCCAGAGAAAAAGAT 791332 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCA 130168 ||||||||| || || |||| | |||||| Sbjct 791331 GCCCTCCACAGCAGCAAAGGCAACCACTCGCTCA 791298 Score = 102 bits (112), Expect = 1e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || ||||| || | | ||| || ||||| ||||| || || Sbjct 884666 GGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGCTCATTGGAGAAAGTAAGGCC 884607 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| ||||||| |||||||| ||||||||| | ||||||||||||||| ||||| Sbjct 884606 AGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCAAATGAGCCAGAGAAAAAGAT 884547 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCA 130168 ||||||||| || || |||| | |||||| Sbjct 884546 GCCCTCCACAGCAGCAAAGGCAACCACTCGCTCA 884513 >seq1943 Length=432286 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||||||||||| | |||| ||||| || | ||| |||||||| ||| Sbjct 424979 TAGATGTTGCTTGTGTATGGCTCAATGGACTCGTTGTTTCCTAGGATCTGGGCTGTAGAG 424920 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 || |||||||| || |||| || |||||||| Sbjct 424919 GCGGTGGGCATTGGGGCCAGAAGCAGGCTGTT 424888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618381744007400