Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3182 86.0 7e-12 >seq3182 Length=3053334 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| ||||| || ||||| ||||||||||| || | ||||||||||| Sbjct 791311 GCCTTTGC-TGCTGTGGAGGGCATCTTTTTCTCTGGCTCATTTGCATCCATTTTCTGGCT 791369 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||| | || || ||||| ||||| | ||||||||| ||||| || | | || || Sbjct 791370 GAAGAAGAGGGGTCTTATGCCTGGCCTTACTTTCTCCAATGAGCTTATCAGCAGAGATGA 791429 Query 60110 GGGCCTCCA 60118 |||||| || Sbjct 791430 GGGCCTGCA 791438 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| ||||| || ||||| ||||||||||| || | ||||||||||| Sbjct 884526 GCCTTTGC-TGCTGTGGAGGGCATCTTTTTCTCTGGCTCATTTGCATCCATTTTCTGGCT 884584 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||| | || || ||||| ||||| | ||||||||| ||||| || | | || || Sbjct 884585 GAAGAAGAGGGGTCTTATGCCTGGCCTTACTTTCTCCAATGAGCTTATCAGCAGAGATGA 884644 Query 60110 GGGCCTCCA 60118 |||||| || Sbjct 884645 GGGCCTGCA 884653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548477386887600