Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5683 100 3e-16 seq5622 95.1 1e-14 seq3182 89.7 6e-13 seq1943 86.0 7e-12 >seq5683 Length=2256607 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||||| |||||| | |||||||| || ||| || || |||||||| Sbjct 1066668 GTGAAGATGTATCGGGGGCTGGCGGAGTCCTTGCCTCCGTGCAGACGTGTCCCAAACTGG 1066609 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||| || ||||| ||||||||| |||||| || |||||||||||| ||| Sbjct 1066608 CCCTGAGGCTGCAGCAGGTTCAGGTTGTTGCTGCCCACAAAGTTCTGAGCCAAACCCACG 1066549 Query 152149 ATCGT 152153 || || Sbjct 1066548 ATGGT 1066544 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 117444 CCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCA 117503 |||||||||||||||| || | | ||| |||||| |||| |||||||| |||||||||| Sbjct 1066158 CCTCACCATGGTGATAGGCTGACATCTCGGCCACGGAGCCGGCCAGCTGTGCCACCTTCA 1066099 Query 117504 TGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCA 117563 || | | ||| |||| | ||||||| | | |||||| | ||| | |||||| Sbjct 1066098 CCTCCCTCTTATCATTCCTCTTAAAGCAGGCAAACAGCACCTTCCTCTGCCCCGGCTTCT 1066039 Query 117564 GACC 117567 |||| Sbjct 1066038 GACC 1066035 >seq5622 Length=170311 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| ||||| ||||||||||| ||| | || || |||||||| Sbjct 82331 GTGAAGATGTAACGGGGACTGGCAGCATCCTTGCCCCCTTGGATTCGGGTACCAAACTGA 82272 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| |||| ||||| ||||||| ||| ||||| ||||| ||||| || || Sbjct 82271 CCCAGGGGCTGCAGGATGTTGACGTTGTTGCTGCCGACGAAGTTCTGGGCCAAGTTGACG 82212 Query 152149 ATCGT 152153 || || Sbjct 82211 ATGGT 82207 >seq3182 Length=3053334 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| ||| ||||||||||| || | ||||| || || | |||||| Sbjct 791451 GGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGCTCATTGGAGAAAGTAAGGCC 791392 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 ||||||||| || | |||||||| ||| || |||| || || ||| ||| ||||| Sbjct 791391 AGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCAAATGAGCCAGAGAAAAAGAT 791332 Query 74870 GCCTTCGACACACGCAAAGGCGAC 74893 ||| || ||| |||||||| || Sbjct 791331 GCCCTCCACAGCAGCAAAGGCAAC 791308 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| ||| ||||||||||| || | ||||| || || | |||||| Sbjct 884666 GGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGCTCATTGGAGAAAGTAAGGCC 884607 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 ||||||||| || | |||||||| ||| || |||| || || ||| ||| ||||| Sbjct 884606 AGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCAAATGAGCCAGAGAAAAAGAT 884547 Query 74870 GCCTTCGACACACGCAAAGGCGAC 74893 ||| || ||| |||||||| || Sbjct 884546 GCCCTCCACAGCAGCAAAGGCAAC 884523 >seq1943 Length=432286 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| |||| ||||| |||||| || || || ||||| || || || Sbjct 422172 TCTAGCTGCTTCCTGCTGGCCATGAAAGATGACAGTATTGAGGGGATCTATGACACACTG 422231 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGT 53428 ||| ||||||||| ||||||||| | | |||||||| ||| Sbjct 422232 AAGCAGTGTGCCCTCATCTCCAAATCAGCTGGTGGTATTGGT 422273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547168700017000