Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq5240 107 3e-18 seq6693 105 9e-18 >seq5240 Length=617125 Score = 107 bits (118), Expect = 3e-18 Identities = 263/394 (67%), Gaps = 10/394 (3%) Strand=Plus/Minus Query 13647 AAAGACAGGGGGTATCT---CGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATC 13703 ||||||||||| | ||| ||| || |||| || |||||| || ||||| || Sbjct 248105 AAAGACAGGGGCTTTCTAACCGT-AG--CCCTCAGTGAAGAAGAGAGGGACTTTCCTATT 248049 Query 13704 GCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATC 13763 ||||| || || |||||||| | |||||||||||||| ||| | ||||| || || | Sbjct 248048 GCCTATTCAATGGTGATCCATGAGAAGATCGAGATGTTTGAGAGGCTCCTCAGAGCTGTG 247989 Query 13764 TACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATC 13823 ||| | || ||||| | ||||| || || |||||| ||||| || | ||||| Sbjct 247988 TACACACCACAGAATGTGTACTGTGTGCATGTGGACAAGAAGTCTCCAGAAAACTTCATG 247929 Query 13824 CGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCAC 13883 ||| || ||||| | || || || || ||| |||| | | | | Sbjct 247928 AGGGCTGTGGAAGCCATTGTTTCTTGTTTTCCAAATGTGTTTGTGGCAAGCAAACAGGAG 247869 Query 13884 GACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTG 13943 || || || | ||| ||| ||| || || || ||||| | ||||||| || ||| Sbjct 247868 AGGGTTGTTTATGCCTCTTGGTCTCGAGTCCAAGCTGACCTGAACTGCATGAATGATCTG 247809 Query 13944 GACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCA--ACCTGTGCGGGATGGACTTCCCGC 14001 | ||| | ||| |||||| |||||| ||| |||||| || | |||||||| Sbjct 247808 ATGGACTCGACTGTCGAGTGGAAGTACCTTATCAATACCTGT--GGAACTGACTTCCCCA 247751 Query 14002 TCAAGACCAACCTGGAGATCGTGCGGGCGCTGAA 14035 |||| |||||| ||||| ||||| || || || Sbjct 247750 TCAAAACCAACACAGAGATGGTGCGAGCACTAAA 247717 >seq6693 Length=839357 Score = 105 bits (116), Expect = 9e-18 Identities = 261/391 (67%), Gaps = 10/391 (3%) Strand=Plus/Plus Query 13647 AAAGACAGGGGGTATCT---CGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATC 13703 ||||||||||||| ||| ||| || |||| || |||||| || ||||| || Sbjct 23502 AAAGACAGGGGGTTTCTAACCGT-AG--CCCTCAGTGAAGAAGAGAGGGACTTTCCTATT 23558 Query 13704 GCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATC 13763 ||||| || || |||||||| | |||||||||||||| ||| | ||||| || || | Sbjct 23559 GCCTATTCCATGGTGATCCATGAGAAGATCGAGATGTTTGAGAGGCTCCTCAGAGCTGTG 23618 Query 13764 TACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATC 13823 ||| | || ||||| | ||||| || || |||||| ||||| || | ||||| Sbjct 23619 TACACACCACAGAATGTGTACTGTGTGCATGTGGACAAGAAGTCTCCAGAAAACTTCATG 23678 Query 13824 CGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCAC 13883 || || ||||| | || || || || ||| |||| | ||| | Sbjct 23679 AAGGCTGTGGAAGCCATTGTTTCTTGTTTTCCAAATGTGTTTGTGGCAAGCAAACTGGAG 23738 Query 13884 GACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTG 13943 || || || | ||| ||| ||| || || || ||||| | ||||||| || ||| Sbjct 23739 AGGGTTGTTTATGCCTCTTGGTCTCGAGTCCAAGCTGACCTGAACTGCATGAATGATCTG 23798 Query 13944 GACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCA--ACCTGTGCGGGATGGACTTCCCGC 14001 | | ||| | || |||||| |||||| ||| |||||| || | |||||||| Sbjct 23799 GTGGACTCGACTGTTGAGTGGAAGTACCTTATCAATACCTGT--GGAACTGACTTCCCCA 23856 Query 14002 TCAAGACCAACCTGGAGATCGTGCGGGCGCT 14032 |||| |||||| |||| ||||| || || Sbjct 23857 TCAAAACCAACACAGAGACGGTGCGAGCACT 23887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658682260230400