Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2049 172 4e-38 >seq2049 Length=84106 Score = 172 bits (190), Expect = 4e-38 Identities = 139/168 (83%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| ||||||||||| ||| | || ||||||||||| |||||||| || |||||||| Sbjct 12651 CATGTCTGTGTACTCTGCCCCGTAGTGTCTCCACTGGAAGCCGTACACTGGCCCCAGGTC 12710 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 |||||| || | ||||| |||||| || ||||| ||||| | || ||||||||||| Sbjct 12711 TCCCTCCTCTCGGTGCTGGAAGCCGCTGCGGTCCAGGAAGTCCCGAGAGCCGTTGGCGTC 12770 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||||| || ||||||||||| ||||| |||| ||| ||||| || Sbjct 12771 CCAGATCTTCACGCCCTTCTCAGACAGCTCCTTGGCGTTGGTGGAGCC 12818 Score = 156 bits (172), Expect = 3e-33 Identities = 139/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 10019 AGGCCTGTGATGTGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 10078 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| ||||| | |||||| || || ||||| ||||| ||||| | | Sbjct 10079 ACGCCCAGACCCATGTCTCCCGATCGCTGGTACAGTTGGCACGACAGCTCACCGTCACAC 10138 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 ||||||||||| |||| || |||||||| || || ||||| ||| || |||| Sbjct 10139 ACGTAAAACTGGCACAGCGCATGGCACGGGGGCAGCGCCATCAGGGGCAGGTCT 10192 Score = 147 bits (162), Expect = 2e-30 Identities = 137/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 9500 AGTCCTGTGATGTGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 9559 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| |||| | |||||| || || ||||| ||||| ||||| | | Sbjct 9560 ACGCCCAGACCCATGTCTCCCGGTCGCTGGTACAGTTGGCACGACAGCTCACCGTCACAC 9619 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 |||||||||| |||| || |||||||| || || ||||| ||| || |||| Sbjct 9620 GCGTAAAACTGGCACAGCGCATGGCACGGGGGCAGCGCCATCAGGGGCAGGTCT 9673 Score = 102 bits (112), Expect = 7e-17 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 30114 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30173 |||||||||||||||| |||| ||||||||| | ||| ||||||||| |||||| || Sbjct 10452 CTTTGGGGTTCCAGGCACACATGATGATGCGTCGGTCCTCTGGGTTGGCTCTGATGGTGT 10511 Query 30174 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNCATGT 30227 | | | | || |||||||| |||||||| |||| | |||||||| ||||| Sbjct 10512 CGATGACCTTCTGCAGCTGGTCCACCCCTTTCCCTGCGTAGTCTGAGGGCATGT 10565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406276157556180