Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5865 129 5e-25 >seq5865 Length=143300 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || ||| | || || ||||| ||||| | Sbjct 26033 CATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAG 25974 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| ||||| || || || |||||||||||||| || || || || Sbjct 25973 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 25914 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||| ||||| || ||||||| || | ||| | ||||| ||||| Sbjct 25913 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCCAACCCTGTCCGACTACAA 25854 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| || | || |||| ||||| || |||| ||||| Sbjct 25853 CATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGGCAT 25803 Score = 125 bits (138), Expect = 6e-24 Identities = 181/253 (72%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 26966 TAAATTTTTTAAT-TTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTA 27024 |||||||||||| || | | |||||||| ||||| || || || || || ||| | | Sbjct 26281 TAAATTTTTTAAGGTTGAAAG--ATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCA 26224 Query 27025 TTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACA 27084 | || ||||| ||||| | |||| | ||||||| ||||| || || || |||| Sbjct 26223 TCACCCTTGAGGTGGAGGCAAGCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACA 26164 Query 27085 AAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACA 27144 |||||||||| || || || || ||| | || || | ||| ||||| || ||||||| Sbjct 26163 AAGAAGGCATTCCCCCAGACCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATG 26104 Query 27145 GTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTT 27204 | ||| | ||||| |||||||| || || ||||| || | || |||| ||||| Sbjct 26103 GCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTC 26044 Query 27205 TGCGGGGTGGCAT 27217 || |||| ||||| Sbjct 26043 TGAGGGGAGGCAT 26031 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || ||| | || || ||||| ||||| | Sbjct 25805 CATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAG 25746 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| ||||| || || || |||||||||||||| || || || || Sbjct 25745 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 25686 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||| ||||| || ||||||| | ||| | ||||| ||||| Sbjct 25685 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 25626 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| || | || |||| ||||| || |||| ||||| Sbjct 25625 CATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGGCAT 25575 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || ||| | || || ||||| ||||| | Sbjct 25577 CATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAG 25518 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| ||||| || || || |||||||||||||| || || || || Sbjct 25517 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 25458 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||| ||||| || ||||||| || ||| | ||||| ||||| Sbjct 25457 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 25398 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||| || |||||||| || | || |||| |||| Sbjct 25397 CATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCG 25362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434880806740800