Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_028819.1 Length=43190 Score E Sequences producing significant alignments: (Bits) Value seq1950 86.0 2e-12 >seq1950 Length=44673 Score = 86.0 bits (94), Expect = 2e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 23285 GCTTCGCGAGCATCATCAACTAATGCATCGTAACCATCAGAGCGCATAGCTTCAAGTGCA 23344 ||||| ||||| |||||||||||||| || |||||||| | ||||| |||||||||||| Sbjct 811 GCTTCACGAGCGTCATCAACTAATGCGTCATAACCATCGGCACGCATCGCTTCAAGTGCA 752 Query 23345 CGCCAGCGACGACCAAAACCCTTATC-GTGAATTGGAACAACTGTACCCGCGTA 23397 || || |||||| |||| | ||| || || | | |||| ||||| || || Sbjct 751 CGGGAGTTGCGACCATAACCATAATCAGTAAACGGAATCAAC-GTACCAGCATA 699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138075060948960