Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2049 141 8e-29 >seq2049 Length=84106 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || || |||||||| ||||| || | ||| Sbjct 10031 TGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGACCC 10090 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||||||||| || || || ||||| |||||||| || | ||||| || ||| Sbjct 10091 ATGTCTCCCGATCGCTGGTACAGTTGGCACGACAGCTCACCGTCACACACGTAAAACTGG 10150 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || || | ||||||||||| ||||||||||| || || || Sbjct 10151 CACAGCGCATGGCACGGGGGCAGCGCCATCAGGGGCAGGTC 10191 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || || ||||||||||| ||||||||||| | || ||||| || ||||| | Sbjct 10191 GACCTGCCCCTGATGGCGCTGCCCCCGTGCCATGCGCTGTGCCAGTTTTACGTGTGTGAC 10132 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || |||||||| ||||| || || || ||||||||||||||||| | || ||||| ||| Sbjct 10131 GGTGAGCTGTCGTGCCAACTGTACCAGCGATCGGGAGACATGGGTCTGGGCGTGCCCTTC 10072 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| |||||||| ||||||||||| || Sbjct 10071 AACATCGCCAGCTACGCCCTGCTCACCTACATGATCGCCCA 10031 Score = 136 bits (150), Expect = 4e-27 Identities = 129/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || || |||||||| ||||| || | ||| Sbjct 9512 TGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGACCC 9571 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCAT-TCGCGACGTAGAATTG 6738 |||||||||| ||| || || || ||||| |||||||| || | | || |||| || || Sbjct 9572 ATGTCTCCCGGTCGCTGGTACAGTTGGCACGACAGCTCACCGTCACACG-CGTAAAACTG 9630 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||| || | ||||||||||| ||||||||||| || || || Sbjct 9631 GCACAGCGCATGGCACGGGGGCAGCGCCATCAGGGGCAGGTC 9672 Score = 136 bits (150), Expect = 4e-27 Identities = 129/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGA-A 34623 || || || ||||||||||| ||||||||||| | || ||||| || |||| || | | Sbjct 9672 GACCTGCCCCTGATGGCGCTGCCCCCGTGCCATGCGCTGTGCCAGTTTTACG-CGTGTGA 9614 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 || |||||||| ||||| || || || ||| ||||||||||||| | || ||||| || Sbjct 9613 CGGTGAGCTGTCGTGCCAACTGTACCAGCGACCGGGAGACATGGGTCTGGGCGTGCCCTT 9554 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||| || || ||||| |||||||| ||||||||||| || Sbjct 9553 CAACATCGCCAGCTACGCCCTGCTCACCTACATGATCGCCCA 9512 Score = 120 bits (132), Expect = 3e-22 Identities = 121/155 (78%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC- 6957 ||||| ||||| |||||||||||||||| ||||| || || |||| ||| |||||||| Sbjct 12661 TACTCTGCCCCGTAGTGTCTCCACTGGAAGCCGTACACTGGCCCCAGGTCTCCCTCCTCT 12720 Query 6958 CCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | | | ||| | || | || |||||| ||||| ||||| |||| |||||||||||||| Sbjct 12721 CGGTGCTGGAAGCCGCTGC-GGTCCAGGAAGTCCCGAGAGCCGTTGGCGTCCCAGATCTT 12779 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 ||| ||| || |||||||||| ||| |||| Sbjct 12780 CACGCCCTTCTCAGACAGCTCCTTGGCGTTGGTGG 12814 Score = 120 bits (132), Expect = 3e-22 Identities = 121/155 (78%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| |||||||||| || ||| ||||||||||||||||| |||| |||| Sbjct 12814 CCACCAACGCCAAGGAGCTGTCTGAGAAGGGCGTGAAGATCTGGGACGCCAACGGCTCTC 12755 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG-GAGGAGGGCGACTTGGGCCCGGTC 34411 | ||||| |||||| || | || | ||| | | | |||||||| ||| |||| || || Sbjct 12754 GGGACTTCCTGGACC-GCAGCGGCTTCCAGCACCGAGAGGAGGGAGACCTGGGGCCAGTG 12696 Query 34412 TACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 ||||| |||||||||||||||| ||||| ||||| Sbjct 12695 TACGGCTTCCAGTGGAGACACTACGGGGCAGAGTA 12661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448223653318800