Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq257 96.9 3e-15 >seq257 Length=13053552 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || ||| || || || || || || |||| || || || | || || Sbjct 5263133 CACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGACCATCTTC 5263074 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| || || || || || |||||||||||||| | ||| | || |||||||||| Sbjct 5263073 CAACTGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTG 5263014 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| |||| || | | || || || | |||||| || | ||||| | || Sbjct 5263013 GATTTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTT 5262954 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 || ||||| || || || ||||| ||||||||||| Sbjct 5262953 GCCAGTCAGGGTCTTCACGAAGATCTGCATCTTTAC 5262918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429509399373395