Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5865 136 9e-27 >seq5865 Length=143300 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||||||||| ||||| |||| ||||| |||| || || | ||||| Sbjct 25592 CAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 25651 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| | | || ||||| || ||||| ||||| ||||| Sbjct 25652 TTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 25711 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || || |||||||| | ||||| || | ||||| || Sbjct 25712 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGT 25771 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||| | || || | ||| | ||||| Sbjct 25772 CTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 25804 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||||||||| ||||| |||| ||||| |||| || ||| ||||| Sbjct 25820 CAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTTGGACCATC 25879 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| | | || ||||| || ||||| ||||| ||||| Sbjct 25880 TTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 25939 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || || |||||||| | ||||| || | ||||| || Sbjct 25940 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGT 25999 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||| | || || | ||| | ||||| Sbjct 26000 CTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 26032 Score = 134 bits (148), Expect = 3e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||||||||| ||||| |||| ||||| |||| || || | ||||| Sbjct 26048 CAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 26107 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| | | || ||||| || ||||| ||||| ||||| Sbjct 26108 TTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 26167 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || || |||||||| | ||||| || | ||||| || Sbjct 26168 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGT 26227 Query 225681 CTTGCCCGT 225689 ||| ||||| Sbjct 26228 CTTCCCCGT 26236 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| | ||| || |||||||||||||| || || |||| ||||| |||| || || | Sbjct 25358 AAGGCGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 25417 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| |||||||| ||||||||||| | | || ||||| || ||||| ||||| Sbjct 25418 ACCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTC 25477 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||| |||||||| ||| || || |||||||| | ||||| || | || Sbjct 25478 TTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGT 25537 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||| ||||| | || || | ||| | ||||| Sbjct 25538 GATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 25576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192425543599010