Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2049 161 8e-35 >seq2049 Length=84106 Score = 161 bits (178), Expect = 8e-35 Identities = 134/164 (82%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||| Sbjct 10019 AGGCCTGTGATGTGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 10078 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || || | |||||| || |||||||| ||||| ||||| | | Sbjct 10079 ACGCCCAGACCCATGTCTCCCGATCGCTGGTACAGTTGGCACGACAGCTCACCGTCACAC 10138 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||||||||| |||| ||||||||||| || || ||||| || Sbjct 10139 ACGTAAAACTGGCACAGCGCATGGCACGGGGGCAGCGCCATCAG 10182 Score = 152 bits (168), Expect = 4e-32 Identities = 132/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||| Sbjct 9500 AGTCCTGTGATGTGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 9559 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || | | |||||| || |||||||| ||||| ||||| | | Sbjct 9560 ACGCCCAGACCCATGTCTCCCGGTCGCTGGTACAGTTGGCACGACAGCTCACCGTCACAC 9619 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 |||||||||| |||| ||||||||||| || || ||||| || Sbjct 9620 GCGTAAAACTGGCACAGCGCATGGCACGGGGGCAGCGCCATCAG 9663 Score = 141 bits (156), Expect = 8e-29 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 30020 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30079 || ||||||||||| |||||||| || |||||||||||||| || | ||||| |||||| Sbjct 12676 TGTCTCCACTGGAAGCCGTACACTGGCCCCAGGTCTCCCTCCTCTCGGTGCTGGAAGCCG 12735 Query 30080 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAG 30139 || ||||| ||||| | || |||||||||||||||||||| || |||||||| || Sbjct 12736 CTGCGGTCCAGGAAGTCCCGAGAGCCGTTGGCGTCCCAGATCTTCACGCCCTTCTCAGAC 12795 Query 30140 AGCTCTTTGGAGTTTGTGGACCC 30162 ||||| |||| ||| ||||| || Sbjct 12796 AGCTCCTTGGCGTTGGTGGAGCC 12818 Score = 104 bits (114), Expect = 2e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 29886 CTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 29945 ||||||||||||||||||||| ||||||||| | ||| ||||||||| |||||| || Sbjct 10452 CTTTGGGGTTCCAGGCACACATGATGATGCGTCGGTCCTCTGGGTTGGCTCTGATGGTGT 10511 Query 29946 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990 | | | | || |||||||| |||||||| |||| | |||||||| Sbjct 10512 CGATGACCTTCTGCAGCTGGTCCACCCCTTTCCCTGCGTAGTCTG 10556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406128969961690