Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2049 163 2e-35 >seq2049 Length=84106 Score = 163 bits (180), Expect = 2e-35 Identities = 137/168 (82%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| ||||||||||| ||| | || ||||| ||||| |||||||| || |||||||| Sbjct 12651 CATGTCTGTGTACTCTGCCCCGTAGTGTCTCCACTGGAAGCCGTACACTGGCCCCAGGTC 12710 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 |||||| || | ||||| |||||| || ||||| ||||| | || ||||||||||| Sbjct 12711 TCCCTCCTCTCGGTGCTGGAAGCCGCTGCGGTCCAGGAAGTCCCGAGAGCCGTTGGCGTC 12770 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||||| || |||||||| || ||||| |||| ||| ||||| || Sbjct 12771 CCAGATCTTCACGCCCTTCTCAGACAGCTCCTTGGCGTTGGTGGAGCC 12818 Score = 143 bits (158), Expect = 2e-29 Identities = 136/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 10019 AGGCCTGTGATGTGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 10078 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| ||||| | |||||| || || ||||| ||||| || || | Sbjct 10079 ACGCCCAGACCCATGTCTCCCGATCGCTGGTACAGTTGGCACGACAGCTCACCGTCACAC 10138 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 ||||||||||| || | || |||||||| || || ||||| ||| || |||| Sbjct 10139 ACGTAAAACTGGCACAGCGCATGGCACGGGGGCAGCGCCATCAGGGGCAGGTCT 10192 Score = 134 bits (148), Expect = 1e-26 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 9500 AGTCCTGTGATGTGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 9559 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| |||| | |||||| || || ||||| ||||| || || | Sbjct 9560 ACGCCCAGACCCATGTCTCCCGGTCGCTGGTACAGTTGGCACGACAGCTCACCGTCACAC 9619 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 |||||||||| || | || |||||||| || || ||||| ||| || |||| Sbjct 9620 GCGTAAAACTGGCACAGCGCATGGCACGGGGGCAGCGCCATCAGGGGCAGGTCT 9673 Score = 98.7 bits (108), Expect = 7e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27380 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 27439 |||||||||||||||| |||| ||||||||| | ||| ||||||||| |||||| || Sbjct 10452 CTTTGGGGTTCCAGGCACACATGATGATGCGTCGGTCCTCTGGGTTGGCTCTGATGGTGT 10511 Query 27440 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 27483 | | | | || |||||||| |||||||| |||| | ||||||| Sbjct 10512 CGATGACCTTCTGCAGCTGGTCCACCCCTTTCCCTGCGTAGTCT 10555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369476059203365