Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3182 93.3 6e-14 >seq3182 Length=3053334 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/146 (75%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 47787 ATGGTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCTTG--AGACATAACT 47843 |||||| |||||||||| |||||| | || ||||||| | || ||||||||| Sbjct 885335 ATGGTT--TTAAAAGTCAGCATCTAGCGTGAAGGTATTATCTGTGGTGCCAGACATAACA 885278 Query 47844 CCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 47903 ||||| |||| || || || |||||||||||||| || || || ||||| |||| || Sbjct 885277 CCCATCCTTTGGTACTCTCCTACACGTTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAG 885218 Query 47904 ATATTTTCCATAAAATCAAATGGATT 47929 || || ||||| || ||||| || || Sbjct 885217 ATGTTCTCCATGAAGTCAAAGGGGTT 885192 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 47794 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCTTG--AGACATAACTCCCATTT 47850 ||||||||||| |||||| | || ||||||| | || ||||||||| ||||| Sbjct 792138 TTTAAAAGTCAGCATCTAGCGTGAAGGTATTATCTGTGGTGCCAGACATAACACCCATCC 792079 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 |||| || || || |||||||||||||| || || || ||||| |||| || || || | Sbjct 792078 TTTGGTACTCTCCTACACGTTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCT 792019 Query 47911 CCATAAAATCAAATGGATT 47929 |||| || ||||| || || Sbjct 792018 CCATGAAGTCAAAGGGGTT 792000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694608754565600