Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5361 93.3 6e-14 seq3182 91.5 2e-13 >seq5361 Length=1636355 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 ||||||||||||| || | || || ||| | | ||| |||||||| || || | ||| | Sbjct 1221675 CTTCATCTCTACTGATAAGCTCATTGGAATAGGAGAGTCCAGGCATCAGACCCCTCTTCT 1221616 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| | || || || || || ||||| || || ||||| || || || || |||| Sbjct 1221615 TCAGCCAGTAGATGGCAGCAAAGGACCCAGAGAAAAAGATGCCCTCCACTGCTGCAAATG 1221556 Query 46772 CGACAAGTCTCTCTCC 46787 | ||||||||||| || Sbjct 1221555 CCACAAGTCTCTCCCC 1221540 >seq3182 Length=3053334 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCT-TCTTGT--GACATAACTCCCATTT 46339 |||||||||| |||||| | || ||||||| | || |||||||| ||||| Sbjct 792138 TTTAAAAGTCAGCATCTAGCGTGAAGGTATTATCTGTGGTGCCAGACATAACACCCATCC 792079 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 ||||||| || ||||||||||||||||| || || || ||||| |||| || || || | Sbjct 792078 TTTGGTACTCTCCTACACGTTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCT 792019 Query 46400 CCATAAAATCAAACGGATT 46418 |||| || ||||| || || Sbjct 792018 CCATGAAGTCAAAGGGGTT 792000 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCT-TCTTGT--GACATAACTCCCATTT 46339 |||||||||| |||||| | || ||||||| | || |||||||| ||||| Sbjct 885330 TTTAAAAGTCAGCATCTAGCGTGAAGGTATTATCTGTGGTGCCAGACATAACACCCATCC 885271 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 ||||||| || ||||||||||||||||| || || || ||||| |||| || || || | Sbjct 885270 TTTGGTACTCTCCTACACGTTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCT 885211 Query 46400 CCATAAAATCAAACGGATT 46418 |||| || ||||| || || Sbjct 885210 CCATGAAGTCAAAGGGGTT 885192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712872775732800