Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq1950 125 2e-24 >seq1950 Length=44673 Score = 125 bits (138), Expect = 2e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 26965 CCATTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTC 27024 ||||||||| ||| ||| || |||||| | || | ||||||||| |||||||| Sbjct 25085 CCATTTACGCGTTTGCAACTTACCCTCAATGTAAACTTGAGAGCCTTTGCGTAGGTATTC 25026 Query 27025 ACCAGCGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTT 27084 ||| || ||||| || ||||| || |||| |||| ||||||||||| || | ||||| Sbjct 25025 ACCGGCAATTTCAGCTAGCTTTCCAAAGACAGCAACACGGTGCCATTCTGTTTTTTCTTT 24966 Query 27085 TGGTTCGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAAC 27144 | | ||||| ||| |||||||||||| |||| | ||| || | | | || ||||| Sbjct 24965 TTGCTCGCCAGTGTTCTTATCTTTCCAGCTTTCTGATGTTGCCAACGTAAAGTTAGCAAC 24906 Query 27145 TGCGCCACC 27153 ||||||||| Sbjct 24905 TGCGCCACC 24897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134004995192400