Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq1950 86.0 4e-12 >seq1950 Length=44673 Score = 86.0 bits (94), Expect = 4e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 44744 AATTTCCGTCGTGTAACGTTCTACACCGGCGTCATCTGTCCACTTACGGGTTTTAAGTTT 44803 |||||| || ||||| | ||| ||| | | | | ||| ||||| |||| | || Sbjct 25124 AATTTCTGTAGTGTACTGATCTTGACCATCTTTGTTTTGCCATTTACGCGTTTGCAACTT 25065 Query 44804 CCCTTCGATGTAGACCTGAGAACCTTTTCGTAAATACTCACTCGCAATTTCAGCAAGTTT 44863 || || ||||| || ||||| ||||| |||| || |||| ||||||||||| || || Sbjct 25064 ACCCTCAATGTAAACTTGAGAGCCTTTGCGTAGGTATTCACCGGCAATTTCAGCTAGCTT 25005 Query 44864 TCCGAACAAAACGACTTTATGCCATTCTGTTTGCTCTTTCTGTTGGCCCGTTTGCTTGTC 44923 ||| || | | | || ||||||||||||| ||||| || | ||| || | ||| || Sbjct 25004 TCCAAAGACAGCAACACGGTGCCATTCTGTTTTTTCTTTTTGCTCGCCAGTGTTCTTATC 24945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330871312952890