Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_031274.1 Length=50509 Score E Sequences producing significant alignments: (Bits) Value seq204 288 3e-73 seq141 150 6e-32 seq115 104 8e-18 >seq204 Length=1493 Score = 288 bits (318), Expect = 3e-73 Identities = 469/671 (70%), Gaps = 6/671 (1%) Strand=Plus/Plus Query 5620 TAGAGGACTTCGATAAGGCTGCCGG--ATTCGATGTAGATGGATTCGGTAACTTGTACGA 5677 |||| |||||||||||||||| || |||| ||| || ||||| || ||| | ||||| Sbjct 768 TAGAAGACTTCGATAAGGCTGAGGGCTATTC--TGTGGACGGATTTGGCAACCTCTACGA 825 Query 5678 ATACTACATGAGTGACTGGGTAGAAATCCTGGAGTTCTACGGAGACTACCACGATAAAGA 5737 ||||||| ||||| ||||| || || |||||||| || ||||||||| | ||| Sbjct 826 ATACTACCAATCTGACTATGTAGAGATACTTGAGTTCTATGGCGACTACCACAGCACAGA 885 Query 5738 AACTGGTGAACTGCAAACCAATAGAATTATCACTGTAGTAGATAGGTCGACCGAAGTTCG 5797 ||||||||||||| | | || | | || || | | || | | | |||| | Sbjct 886 AACTGGTGAACTGAAGTCAAACGTAGTCATAACAATCTTTGACCGTTGCCATGTAGTTAG 945 Query 5798 TAATGAACCCATTCCGACTTGGTTTGGCTCCGCCCCAATTTATCATGTTGGTTGGAGATT 5857 | || || || | ||| ||||| ||||| | | ||||||||| ||| | Sbjct 946 GGAAGAGCCTATCAAGTCTTACTTTGGTAAAGCCCCCTTATGTCATGTTGGGTGGCGTAC 1005 Query 5858 CCGACCAGACAATCTGTGGGCCATGGGGCCTCTGGACAATTTGGTGGGTATGCAATACCG 5917 ||||| || || |||||||| ||||| ||| ||||||| ||||| |||||||||||||| Sbjct 1006 ACGACCTGATAACCTGTGGGCTATGGGACCTTTGGACAACTTGGTTGGTATGCAATACCG 1065 Query 5918 AATTGACCATCTTGAGAATGCTAAAGCTGATGCTGTCGATCTTAT-CATTCAACCTCCGT 5976 |||||||| |||||||| ||||||||| || | || ||| | | || || ||| Sbjct 1066 TATTGACCACCTTGAGAACCTTAAAGCTGACGCAATGGA-CTTGTGTGTGCACCCACCGC 1124 Query 5977 TGAAAATTGTTGGTGAGGTAGAGGAATTTGTATGGGGCCCTGGTGCGGAGATTCATCTGG 6036 | ||| ||||||||||| || |||||||||||||| ||||| ||||| || | Sbjct 1125 TTGTCATTAAGGGTGAGGTAGAAGAGTTTGTATGGGGCCCAGGTGCTGAGATACACACCG 1184 Query 6037 ACCAAGGCGGTGATGTACAAGAGGTTGCCAAGAACGTTAACTACATCATCAACGCAGACA 6096 || | ||||| ||| ||| | | ||||||| | ||| ||| || || | Sbjct 1185 ACGAGAATGGTGACGTAGCTGAGCTAGGCAAGAACCTGAACGGCATTATAGCAGCGTCTA 1244 Query 6097 ACCAAATTCAAATGCTAGAAGATCGTATGGAACTATATGCTGGCGCTCCTCGTGAGGCTA 6156 || ||||| || ||||| |||||||| || ||||||| || |||||||||| Sbjct 1245 ACGAAATTGGCTCTCTTGAAGAAAAAATGGAACTGTACTCTGGCGCACCACGTGAGGCTA 1304 Query 6157 TGGGCATTCGTACTCCTGGTGAAAAGACTGCATTTGAGGTACAACAGCTTGGTAATGCTG 6216 |||| ||||| || | ||||| ||||| || || || || || | | ||||||| Sbjct 1305 TGGGGATTCGCACAGCAGGTGAGAAGACAGCCTTCGAAGTTCAGTCGTTGCAAAATGCTG 1364 Query 6217 CTGGTCGAATCTTCCAAGAGAAAGTCACTACGTTTGAAGTAGAGCTGTTGGAGCCTGTGC 6276 |||| || ||||| ||||||||| | || | ||||| | ||||| | ||||| | Sbjct 1365 CTGGCCGTATCTTTCAAGAGAAAATTACCAGCTTTGAGATTGAGCTCCTAGAGCCCACAC 1424 Query 6277 TGAACGCTATG 6287 |||| || ||| Sbjct 1425 TGAATGCCATG 1435 Score = 172 bits (190), Expect = 2e-38 Identities = 208/283 (73%), Gaps = 0/283 (0%) Strand=Plus/Plus Query 4925 AATGTCAACTAAAGTAGCTGAGCTTAATAGCTTGCTGGTACGTGATAGTTCTGCCCAGTG 4984 |||||| |||||||| |||||||| || | | ||| || ||| | | || ||| Sbjct 70 AATGTCTACTAAAGTTGCTGAGCTAAACAAGTGGCTCAAACAAGATGATGCAGCGTCGTG 129 Query 4985 GGTAGCCTATCTCTGGGATCGTTTTAATAATCAACGACGCCAGAAAATTGAAGAGTGGAA 5044 ||| | || | ||| |||||| || ||||| || | || |||||||||||||| Sbjct 130 GGTGTCTAATTTGTGGACGTCTTTTAACAACCAACGTCGTGAAAAGATTGAAGAGTGGAA 189 Query 5045 AGAGTTACGTAACTATGTATTCGCAACAGACACCACTACCACTTCTAACCAAGGTCTTCC 5104 || ||||||||||| || || || || |||||||| ||||| ||||||| | || Sbjct 190 GGAATTACGTAACTACGTCTTTGCCACTGACACCACAACCACAGCTAACCAGACATTGCC 249 Query 5105 GTGGAAGAACTCTACCACCCTACCCAAGCTTTGTCAGATTAGGGACAACCTTCACTCTAA 5164 |||||||||||||| || || || |||||||| || || | |||||||| ||||| || Sbjct 250 TTGGAAGAACTCTACAACACTCCCTAAGCTTTGCCAAATACGAGACAACCTGCACTCCAA 309 Query 5165 CTATTTCTCGTCCCTATTTCCTAACGACGACTGGCTTCGCTGG 5207 ||| || || |||| || ||||| ||||||||| | || ||| Sbjct 310 CTACTTGTCTGCCCTCTTCCCTAATGACGACTGGTTGCGTTGG 352 >seq141 Length=1247 Score = 150 bits (166), Expect = 6e-32 Identities = 272/389 (70%), Gaps = 13/389 (3%) Strand=Plus/Minus Query 25139 GTCCCCACACAATACAAGTTTGCTGTACTCACCTACACGAGTGACCAACACTTTAATCTG 25198 |||||||||||| || || |||||||||| |||| ||| |||| |||||| || | || Sbjct 1247 GTCCCCACACAACACCAGCTTGCTGTACTTACCTTGACGTGTGAGCAACACCTTCAATTG 1188 Query 25199 TTCGAAGGACATGTTCTGACATTCATCTACAATGATGAGAGAGTCGTCCCATGTAAGACC 25258 ||||||| ||||||||||||||| || || | ||||| || || ||| ||||||| || Sbjct 1187 CTCGAAGGTCATGTTCTGACATTCGTCCACGAGGATGAAAGCGTTGTCGAATGTAAGGCC 1128 Query 25259 TTGGATATGTTCAAGCATGTA-GTATTGAAGACGAT---GGTTTTTCTCAAGGTCTTCTT 25314 || || | |||||| | | | | ||||||| || | | || || || | ||| | Sbjct 1127 CTGTATGTATTCAAG-AGGAAGGAATTGAAG-CGTTCCACGCTTCTCCCA--GCTTTCCT 1072 Query 25315 GGTGTCGGATGCCAATACCATGCTCAATAAAGTTTTGTTGCAGGGGCCTAATCCAAGGCT 25374 | || | | ||||| | | | | |||| | |||||| | ||| ||| Sbjct 1071 GTTGCACAACAGGCACGCCATGTAAACGCAGGCTCTGTTCAATGGGCCTCACCCACGGCC 1012 Query 25375 CCAACTTCTCTCGCTCAGTGCCAGGCAGAAACCCGTTAGTATCAGCGAAAGAGACGTTAG 25434 ||| |||||| || |||||||| || |||||||| || ||||||| || || || || | Sbjct 1011 CCATCTTCTCACGTTCAGTGCCTGGGAGAAACCCATTCTTATCAGCAAAGGATACATTTG 952 Query 25435 GCCTAGCAATCACTACACGGCTCT-TACGGTTAGTTTCTAGCCACGATACAGCTCGACCA 25493 | | | |||||| | ||| | | | || |||| ||||| |||||| || Sbjct 951 GACGTG---TCACTATA-AGCTGTCTGCCCTTCGTTTTAAGCCATTCTACAGCAGCCCCG 896 Query 25494 ATAGCACCATATGTCTTACCTGTCCCAGC 25522 |||| || |||||||| ||||||||||| Sbjct 895 GTAGCTCCGTATGTCTTGCCTGTCCCAGC 867 >seq115 Length=1163 Score = 104 bits (114), Expect = 8e-18 Identities = 241/361 (67%), Gaps = 2/361 (1%) Strand=Plus/Plus Query 12107 CAATCGCCTAGACTTGTTTCCTACATCTTGTTTAGCCAATTGGTAGACAGCCCAGCAGAT 12166 ||||| || ||| | || ||||||||||| ||| | |||| |||| | | | || Sbjct 49 CAATCACCAAGAATGACCTCTTACATCTTGTTCAGCAAGCTGGTTGACAACATAACCGAC 108 Query 12167 ATTGTGAACTGCTACCAAGATGGTGATCCTACCAGTACAGAAGAGCCAGAACTAGTAGAT 12226 || | || ||||| |||||||| || || || | || ||||| |||| | Sbjct 109 ATAGGCAAGTGCTATCAAGATGGGGACCCAACGTCGAAGGACACCCCAGATATAGTTGCG 168 Query 12227 ACTGATGGTGGATTTATCCGTATCGAAGGTGCTTACGACATTATCAATTTGGTCAATGTC 12286 || || ||||| |||||||| |||| || || |||| ||||| || |||| | || Sbjct 169 ACAGACGGTGGTTTTATCCGACTCGATGGCGCATACGGCATTAAGAAGATGGTAAGCGTT 228 Query 12287 GGAAGTGCTGTGATGGTAGTGGCAGCTAATGGTATATGGATGATCCAAGGTGGTAGTGAC 12346 || || | || ||| | |||| ||||| | ||| || ||||||||||||||| Sbjct 229 GGTAGCCAACTTATAGTAATAGCAGAGAATGGCGTGTGGGGTATACAAGGTGGTAGTGAC 288 Query 12347 TATGGATTCACTGCAACCAACTACCTCGTGACTAAGATCAGTGAGCATGGCTG-CTCTTC 12405 ||||| || | || |||||| | || | ||| || || ||||| || | | Sbjct 289 TATGGGTTTAACGCTGAAAACTACTTGGTTAAGAAGTATAGCGAACATGGTTGTGTAAGC 348 Query 12406 TCCTAATTCCGTAGTGGTTGTTGACAACAGTTTCATGTATTGGGGTGATGATGGTATTTA 12465 || | ||||||| | ||||| |||| | | ||||||||||| || ||||| || Sbjct 349 TCGT-CCAGCGTAGTGTTGGTTGATAACACAGTGCTATATTGGGGTGACGACGGTATATA 407 Query 12466 C 12466 | Sbjct 408 C 408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161493937735330