Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq1950 132 1e-26 >seq1950 Length=44673 Score = 132 bits (146), Expect = 1e-26 Identities = 213/301 (71%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 36480 ACAATCTCTGTGGTGTATCTG-TCTATTCCGTTGCTGTCAGTCCATTTACGAGTACGAAG 36538 ||||| ||||| ||||| ||| ||| || | ||| ||||||||| || | | Sbjct 25126 ACAATTTCTGTAGTGTA-CTGATCTTGACCATCTTTGTTTTGCCATTTACGCGTTTGCAA 25068 Query 36539 CTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCAAG 36598 || || || |||||||| || || ||||| || |||||||| || |||| ||| || || Sbjct 25067 CTTACCCTCAATGTAAACTTGAGAGCCTTTGCGTAGGTATTCACCGGCAATTTCAGCTAG 25008 Query 36599 TTTCCCGAATATGACAATACGATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTGCTT 36658 || || || | ||| ||| ||||| ||||| | |||||| | || || || | ||| Sbjct 25007 CTTTCCAAAGACAGCAACACGGTGCCATTCTGTTTTTTCTTTTTGCTCGCCAGTGTTCTT 24948 Query 36659 ATCTTTCCACTGCTCAGATGTTGC-AACGGAAATGTTGACAATTGCAGAACCTGATGCTG 36717 ||||||||| || |||||||| |||| ||| ||| ||| ||| ||| | | Sbjct 24947 ATCTTTCCAGCTTTCTGATGTTGCCAACGTAAA-GTTAGCAACTGCGCCACCACTAGGTA 24889 Query 36718 AATATTTAACTTCAGGGTCGTTTCCGAGAGTTCCGACAATAATTACTTTATTTACGCCGC 36777 || | ||||||||||| ||||| || ||| | || | || ||| ||||||| | |||| Sbjct 24888 AACACTTAACTTCAGGATCGTTACCAAGATTGCCAATGATGATTGCTTTATTGATTCCGC 24829 Query 36778 G 36778 | Sbjct 24828 G 24828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152070711592980