Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq1950 107 5e-19 >seq1950 Length=44673 Score = 107 bits (118), Expect = 5e-19 Identities = 235/342 (69%), Gaps = 9/342 (3%) Strand=Plus/Minus Query 26679 TTCGGTAGTGAACCGATCCTGTCTG-CTTTGATCCTGCCATTTTCTTGTCCGCAATTTGC 26737 ||| |||||| || |||| || | ||||| | |||||||| | || |||| || | Sbjct 25121 TTCTGTAGTGTACTGATCTTGACCATCTTTGTTT-TGCCATTTACGCGTTTGCAACTTAC 25063 Query 26738 CTTCAAGATAAACCTCAGAACCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCC 26797 | |||| ||||| | ||| ||||| || || || || | ||||||||| || || || | Sbjct 25062 CCTCAATGTAAACTTGAGAGCCTTTGCGTAGGTATTCACCGGCAATTTCAGCTAGCTTTC 25003 Query 26798 CGCTCATTACCACACGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCAC 26857 | | | ||||||||||| || || | || |||||||| ||||| | |||||| Sbjct 25002 CAAAGACAGCAACACGGTGCCATTCTGTTTTTTCTTTTTGCTCGCCAGTGTTCTTATCTT 24943 Query 26858 GCCATTGTTCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGGTGAATAT 26917 ||| |||||| || || | |||| ||| |||| || || | | ||| || | Sbjct 24942 TCCAGCTTTCTGATGTTGCCAACGTAAAGTTAGCAACTG-CGCCACCACTAGGTAAACAC 24884 Query 26918 CTGATTTCTGGATCATGCCCAAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTT 26977 | | ||| ||||| | ||||| ||||| ||||| | ||||| | || | || Sbjct 24883 TTAACTTCAGGATCGTTACCAAGATTGCCAATGATGATTGCTTTATTGATTCCGCGACTC 24824 Query 26978 GCCAT-TTATGCCGCCTGTTTAAGTTC-GTTAACTCTAATGT 27017 ||||| |||| ||| ||||||||| ||||| || ||||| Sbjct 24823 GCCATGTTAT--TGCC-CTTTAAGTTCAGTTAA-TCGAATGT 24786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129285382778150