Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5865 159 2e-34 seq257 100 2e-16 >seq5865 Length=143300 Score = 159 bits (176), Expect = 2e-34 Identities = 179/237 (76%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 44103 ATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGT 44162 ||| || |||||||| || | || ||||||||| || ||| |||||| |||||||||| Sbjct 25342 ATTACAAGCCCCCTCTAAGGCGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGT 25401 Query 44163 AATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 | |||| || ||| | || ||||||||||| || || |||||||| | |||||| | Sbjct 25402 AGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGT 25461 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 ||| || | ||||| || ||| ||||| || | | |||| | ||||||||| Sbjct 25462 CTGGGGGAATGCCTTCTTTGTCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCGCTT 25520 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | |||||||| | || || ||||| ||||||||||||||||||||||| |||||| Sbjct 25521 GCCTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATG 25577 Score = 147 bits (162), Expect = 2e-30 Identities = 174/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || |||||||| || ||| ||| || ||||||||||| || Sbjct 25574 CATGCCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTC 25633 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || || |||||||| | |||||| |||| Sbjct 25634 GGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGG 25693 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||| || ||| ||||| || | | |||| | ||||||||| | | Sbjct 25694 GGGAATGCCTTCTTTGTCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCGCTTGCCT 25752 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| | || || ||||| ||||||||||||||||||||||| |||||| Sbjct 25753 CCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATG 25805 Score = 141 bits (156), Expect = 7e-29 Identities = 175/235 (74%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || |||||||| || ||| ||| || ||||||||||| || Sbjct 25802 CATGCCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTC 25861 Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || | |||| | | || ||||||||||| || || |||||||| | |||||| ||| Sbjct 25862 GGACAGGGTTG--GACCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCT 25919 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | || | ||||| || ||| ||||| || | | |||| | ||||||||| | Sbjct 25920 GGGGGAATGCCTTCTTTGTCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCGCTTGC 25978 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| | || || ||||| ||||||||||||||||||||||| |||||| Sbjct 25979 CTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATG 26033 Score = 141 bits (156), Expect = 7e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || |||||||| || ||| ||| || ||||||||||| || Sbjct 26030 CATGCCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTC 26089 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || || |||||||| | |||||| |||| Sbjct 26090 GGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGG 26149 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||| || ||| ||||| || | | |||| | ||||||||| | | Sbjct 26150 GGGAATGCCTTCTTTGTCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCGCTTGCCT 26208 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| | || || ||||| ||||||||||||||||| ||||| ||||| Sbjct 26209 CCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 26260 >seq257 Length=13053552 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || || ||| ||||| ||||||||||| |||| || || | || || Sbjct 5263133 CACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGACCATCTTC 5263074 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| ||||| ||||||| ||||||||| || | || | || || || ||| Sbjct 5263073 CAACTGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTG 5263014 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || ||| | | | || ||||| || |||||||| | || || ||||| Sbjct 5263013 GATTTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTT 5262954 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||||||||| ||||| Sbjct 5262953 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 5262924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359960061246555