Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq6219 170 3e-37 seq5506 105 1e-17 >seq6219 Length=4626575 Score = 170 bits (188), Expect = 3e-37 Identities = 204/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 || ||||||||| | || || || ||| | | ||||| ||||| ||| ||| ||| Sbjct 4458799 CCTTTGACGTTGTTGCACACCAGTCGCTGCAGCGAGGCGCTGTTGACAATCTGGAAGCCC 4458740 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 || || ||||| |||||||||||||||||| ||||||| |||||| ||| ||| | Sbjct 4458739 ACCGGGCCACCGAACGTGCTGGGCTTCCAGTACTCCGGGGAACAGATGGGGTTACCCAGG 4458680 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 |||||||| || ||| | || || |||| ||| | ||| |||| || ||||| |||||| Sbjct 4458679 AGGCCTTTCAGCGAGTAGGGGGCACCCATCTCCACCATGGTCTCCCCAAAGATTGCGTTG 4458620 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 | |||||||| ||||||| | || | |||||||||||| || || |||| ||||| Sbjct 4458619 GTGCGGGGCTTCTCCACCATCAGGCCAGGGTACAGCTCCACGGCATCCACGTGGCCGTAC 4458560 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || || | ||| || ||||| |||| |||| Sbjct 4458559 ATCTCCTCCAGCTGGGCCGCCATCTCGGTTTCACCTG 4458523 Score = 145 bits (160), Expect = 1e-29 Identities = 185/255 (73%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | ||||| || ||||||||||| ||| ||| || ||| | ||||| Sbjct 4456528 TCACCGATGAGAATGAGACGTGTGGTCTGGAAGAGTCTCTCATCGTCCCAGTGAGGATGG 4456469 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 | | || || || || ||||| | |||||| || | ||||||||||||||||||||| Sbjct 4456468 ACCTCTTGGAGCACCTCACACACACGGTTGTGCTCACGCAGCCAGATAGTGGCGTACATC 4456409 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 || || ||||| |||||||| || ||||| || |||||||| | |||| |||||| Sbjct 4456408 ATCAGGCCAGGCACCAGGCCGAACGCCTCGTGGCCGACAGCGAAACGCCGAGACTCGGGC 4456349 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | || || ||| ||||| ||| || || ||||| ||| || |||| |||| Sbjct 4456348 ACGTGAGGTGGGTAGTGCATGTCCACACCAACTTCGCTGACCAGGGGAGGGTACACTTCA 4456289 Query 9472 CCGTCAATCATCTGA 9486 || || | || |||| Sbjct 4456288 CCATCTAACACCTGA 4456274 >seq5506 Length=141892 Score = 105 bits (116), Expect = 1e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || ||||| |||||||| ||||| ||| | || || |||||| ||| ||| || ||| Sbjct 66142 CCACCGAATGTGCTGGGTTTCCAATACTCGGGAGAACAGATGGGATTCCCCAAAAGACCT 66083 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || | ||||||||||| |||| ||| | |||||||| || || ||||| ||| || Sbjct 66082 TTCAAAGAGAACGGAGCTCCCATCTCCACCATGCTCTCCCCAAATATGGCCCCGGGCCGA 66023 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 | ||| |||| || | || | ||| | ||||| ||| |||| ||| ||||| || Sbjct 66022 GTCTTCTCCAGCAGCAGACCAGGGTAGAACTCCAGAGCATCGATGTCCCCGTACAG 65967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716814834961600