Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5865 150 4e-31 seq257 149 2e-30 >seq5865 Length=143300 Score = 150 bits (166), Expect = 4e-31 Identities = 170/225 (76%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 177908 TAAGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGA 177967 ||||||| ||| | | || || || ||||| || ||||| || || || |||||||| || Sbjct 26272 TAAGGTTGAAA-GATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACCCTTGA 26214 Query 177968 GGTGGA---AAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||| |||| |||||||| ||||||||||| ||||| |||||||||||||| Sbjct 26213 GGTGGAGGCAAGC---GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGG 26157 Query 178025 AATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGAC 178084 || || || |||||||| | | |||||||| || || ||||| |||||||| | || Sbjct 26156 CATTCCCCCAGACCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCAC 26097 Query 178085 TCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || |||| || ||| |||| ||||| || || || || || || Sbjct 26096 CCTGTCCGACTACAACATCCAGAAAGAGTCCACTCTCCACCTGGT 26052 Score = 149 bits (164), Expect = 2e-30 Identities = 159/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || |||||||| || ||||| || || || |||||||| |||||||| |||| Sbjct 25801 CAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC--- 25745 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| ||||||||||| ||||| |||||||||||||| || || || |||||| Sbjct 25744 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 25685 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | | |||||||| || || ||||| |||||||| | || || |||| || ||| Sbjct 25684 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 25625 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || || || || || Sbjct 25624 ATCCAGAAAGAGTCCACTCTCCACCTGGT 25596 Score = 145 bits (160), Expect = 2e-29 Identities = 166/222 (75%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || |||||||| || ||||| || || || |||||||| |||||||| |||| Sbjct 25573 CAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC--- 25517 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| ||||||||||| ||||| |||||||||||||| || || || |||||| Sbjct 25516 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 25457 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | | |||||||| || || ||||| |||||||| | || || |||| || ||| Sbjct 25456 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 25397 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || || || || || || | || ||| Sbjct 25396 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGCCTTAGA 25355 Score = 143 bits (158), Expect = 6e-29 Identities = 158/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || |||||||| || ||||| || || || |||||||| |||||||| |||| Sbjct 26029 CAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC--- 25973 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| ||||||||||| ||||| |||||||||||||| || || || |||||| Sbjct 25972 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 25913 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | | |||||||| || || ||||| |||||||| || || |||| || ||| Sbjct 25912 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCCAACCCTGTCCGACTACAAC 25853 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || || || || || Sbjct 25852 ATCCAGAAAGAGTCCACTCTCCACCTGGT 25824 >seq257 Length=13053552 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 5262927 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGA--GCCCAGTG 5262984 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| ||||| || || ||||||||||| || ||||| || ||||||| Sbjct 5262985 ACACTATTGAGAATGTCAAGGCTAAAATCCAGGACAAAGAGGGCATCCCCCCTGACCAGC 5263044 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || ||| | |||||||| | || || |||| || ||| Sbjct 5263045 AGCGTCTGATCTTCGCCGGTAAGCAGTTGGAAGATGGTCGTACCCTATCCGACTACAACA 5263104 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 5263105 TCCAGAAGGAATCCACCCTCCATCTTGT 5263132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203624551296510