Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5865 140 3e-28 >seq5865 Length=143300 Score = 140 bits (154), Expect = 3e-28 Identities = 166/223 (74%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| || || ||| ||||||||| ||||| |||||||| |||||||| Sbjct 25359 AGGCGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGA 25418 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| |||| | ||| ||||| | ||||| || || Sbjct 25419 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCT 25478 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 |||||| ||| || ||| |||| | || |||||||| | ||||||||| | Sbjct 25479 TTGTCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAG 25534 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| || ||||| ||||| ||||||||| Sbjct 25535 GGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATG 25577 Score = 134 bits (148), Expect = 1e-26 Identities = 165/223 (74%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || ||| ||| ||||| ||||| |||||||| |||||||| Sbjct 25587 AGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGG 25646 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| |||| | ||| ||||| | ||||| || || Sbjct 25647 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCT 25706 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 |||||| ||| || ||| |||| | || |||||||| | ||||||||| | Sbjct 25707 TTGTCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAG 25762 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| || ||||| ||||| ||||||||| Sbjct 25763 GGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATG 25805 Score = 129 bits (142), Expect = 5e-25 Identities = 165/225 (73%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || ||| ||| ||||| ||||| |||||||| |||||||| Sbjct 26043 AGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGG 26102 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| |||| | ||| ||||| | ||||| || || Sbjct 26103 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCT 26162 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 |||||| ||| || ||| |||| | || |||||||| | ||||||||| | Sbjct 26163 TTGTCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAG 26218 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| || ||||| || || |||||||| || Sbjct 26219 GGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCATCTT 26263 Score = 125 bits (138), Expect = 7e-24 Identities = 163/223 (73%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || ||| ||| ||||| ||||| |||||||| ||||| | Sbjct 25815 AGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTTGGA 25874 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| |||| | ||| ||||| | ||||| || || Sbjct 25875 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCT 25934 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 |||||| ||| || ||| |||| | || |||||||| | ||||||||| | Sbjct 25935 TTGTCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAG 25990 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| || ||||| ||||| ||||||||| Sbjct 25991 GGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATG 26033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462264039598000