Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq51583 120 3e-22 seq77613 95.1 1e-14 seq101000 84.2 2e-11 >seq51583 Length=2687 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 117024 CCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCA 117083 || ||| || |||||| ||||||||||||| ||||| ||||| ||||||| || || Sbjct 985 CCCCCTCAGGAGAGCGCGTGGTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTT 926 Query 117084 GTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCA 117143 || ||| |||| || ||||| ||||| | ||||| ||||| |||||||| ||| || Sbjct 925 CCTTTGCCTCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCTGGCCTGACCTTCTCCA 866 Query 117144 ACGAGCTCATCTCCAGGGACGAGG 117167 ||||||||||| ||| ||||||| Sbjct 865 ACGAGCTCATCAGCAGAGACGAGG 842 Score = 105 bits (116), Expect = 7e-18 Identities = 98/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||||||| | ||| |||||||| ||| ||| | |||||| Sbjct 1621 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGAGTCTCTGAGGGACGAGGAGCGCTTC 1563 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| |||| || || ||||||||||||||||||||||||||||| ||| Sbjct 1562 TTCATCTCCCACGTGTTGGCGTTCTTTGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 1503 Query 116804 GT 116805 || Sbjct 1502 GT 1501 Score = 102 bits (112), Expect = 8e-17 Identities = 94/117 (80%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||| ||||||||| | ||||| ||||| |||||||| || || Sbjct 1381 GGTGGAGCGCTTCACACAGGAAGTGCAGGTGACGGAGGCCCGGTGTTTCTACGGGTTCCA 1322 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || |||||| |||| ||| Sbjct 1321 GATCGCCATGGAGAACATCCACTCTGAGATGTA--CAGCCTGCTCATCAACACCTAC 1267 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| | ||||| || || ||||| || |||||||| | || | ||| Sbjct 1809 GAGCCGCTGCTGAAGAACAACCCTCGGCGCTTCGTCATCTTCCCCATCAAGTATCACGAC 1750 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||| ||||| || |||||||||| |||||||| Sbjct 1749 ATCTGGCAGATGTACAAGAAGGCAGAGGCCTCCTTCTGGACCGCAGAGGAGGT 1697 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 117275 TTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAA 117334 ||||| || || || ||||||||| ||| | ||| | || ||||| |||| ||| Sbjct 565 TTCCTGACGGAGGCTCTGCCGGTGAAGCTGATCGGAATGAACTGCGAGCTGATGAAGCAG 506 Query 117335 TACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAG 117385 ||||||||||| || |||||||||||| |||| ||||||| | | ||||| Sbjct 505 TACATCGAGTTTGTGGCCGACAGGCTGATGCTGGAGCTGGGCTTCACCAAG 455 >seq77613 Length=31327 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || ||||| || |||||||| | ||||| || | |||||||| || ||||| ||| Sbjct 1380 GAACCTCTGCTCCGAGAGAACCCTAGACGGTTTGTCGTCTTCCCCATCCAGTACCCCGAC 1321 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690 || ||| |||||||| |||| |||| ||||||||||| || |||||||||| Sbjct 1320 ATCTGGAAGATGTACAAGCAGGCACAGGCCTCGTTCTGGACGGTGGAGGAGGTGG 1266 >seq101000 Length=9675 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| | || || || || || || |||||| ||||||| || ||| ||||| Sbjct 761 GGGGAGCGAATTGTAGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCTGGCTCATTCGCT 820 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| | |||||||||||| | || | ||||| ||||| || | | ||||||||| Sbjct 821 GCCATCTATTGGCTCAAGAAGAGAGGATTAATGCCTGGCCTTACCTACTCCAACGAGCTG 880 Query 117152 ATCTCCAGGGACGAGG 117167 || |||||| |||| Sbjct 881 ATTAGCAGGGATGAGG 896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514158537553680