Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq51583 120 3e-22
seq77613 95.1 1e-14
seq101000 84.2 2e-11
>seq51583
Length=2687
Score = 120 bits (132), Expect = 3e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 117024 CCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCA 117083
|| ||| || |||||| ||||||||||||| ||||| ||||| ||||||| || ||
Sbjct 985 CCCCCTCAGGAGAGCGCGTGGTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTT 926
Query 117084 GTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCA 117143
|| ||| |||| || ||||| ||||| | ||||| ||||| |||||||| ||| ||
Sbjct 925 CCTTTGCCTCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCTGGCCTGACCTTCTCCA 866
Query 117144 ACGAGCTCATCTCCAGGGACGAGG 117167
||||||||||| ||| |||||||
Sbjct 865 ACGAGCTCATCAGCAGAGACGAGG 842
Score = 105 bits (116), Expect = 7e-18
Identities = 98/122 (80%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743
||||||| |||||||||||| | ||| |||||||| ||| ||| | ||||||
Sbjct 1621 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGAGTCTCTGAGGGACGAGGAGCGCTTC 1563
Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803
|||||| |||||| |||| || || ||||||||||||||||||||||||||||| |||
Sbjct 1562 TTCATCTCCCACGTGTTGGCGTTCTTTGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 1503
Query 116804 GT 116805
||
Sbjct 1502 GT 1501
Score = 102 bits (112), Expect = 8e-17
Identities = 94/117 (80%), Gaps = 4/117 (3%)
Strand=Plus/Minus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| ||||| ||| | ||||| ||||||||| | ||||| ||||| |||||||| || ||
Sbjct 1381 GGTGGAGCGCTTCACACAGGAAGTGCAGGTGACGGAGGCCCGGTGTTTCTACGGGTTCCA 1322
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917
|||||||||||||||| | ||||| || ||||| | || |||||| |||| |||
Sbjct 1321 GATCGCCATGGAGAACATCCACTCTGAGATGTA--CAGCCTGCTCATCAACACCTAC 1267
Score = 91.5 bits (100), Expect = 2e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|||||||||||| | ||||| || || ||||| || |||||||| | || | |||
Sbjct 1809 GAGCCGCTGCTGAAGAACAACCCTCGGCGCTTCGTCATCTTCCCCATCAAGTATCACGAC 1750
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688
|| |||| |||||||| ||||| ||||| || |||||||||| ||||||||
Sbjct 1749 ATCTGGCAGATGTACAAGAAGGCAGAGGCCTCCTTCTGGACCGCAGAGGAGGT 1697
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 117275 TTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAA 117334
||||| || || || ||||||||| ||| | ||| | || ||||| |||| |||
Sbjct 565 TTCCTGACGGAGGCTCTGCCGGTGAAGCTGATCGGAATGAACTGCGAGCTGATGAAGCAG 506
Query 117335 TACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAG 117385
||||||||||| || |||||||||||| |||| ||||||| | | |||||
Sbjct 505 TACATCGAGTTTGTGGCCGACAGGCTGATGCTGGAGCTGGGCTTCACCAAG 455
>seq77613
Length=31327
Score = 95.1 bits (104), Expect = 1e-14
Identities = 90/115 (78%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|| || ||||| || |||||||| | ||||| || | |||||||| || ||||| |||
Sbjct 1380 GAACCTCTGCTCCGAGAGAACCCTAGACGGTTTGTCGTCTTCCCCATCCAGTACCCCGAC 1321
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690
|| ||| |||||||| |||| |||| ||||||||||| || ||||||||||
Sbjct 1320 ATCTGGAAGATGTACAAGCAGGCACAGGCCTCGTTCTGGACGGTGGAGGAGGTGG 1266
>seq101000
Length=9675
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091
|| ||||| | || || || || || || |||||| ||||||| || ||| |||||
Sbjct 761 GGGGAGCGAATTGTAGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCTGGCTCATTCGCT 820
Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151
||||| | |||||||||||| | || | ||||| ||||| || | | |||||||||
Sbjct 821 GCCATCTATTGGCTCAAGAAGAGAGGATTAATGCCTGGCCTTACCTACTCCAACGAGCTG 880
Query 117152 ATCTCCAGGGACGAGG 117167
|| |||||| ||||
Sbjct 881 ATTAGCAGGGATGAGG 896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514158537553680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |