Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq70617 172 4e-38
seq149956 105 5e-18
>seq70617
Length=8941
Score = 172 bits (190), Expect = 4e-38
Identities = 303/430 (70%), Gaps = 11/430 (3%)
Strand=Plus/Plus
Query 107820 AAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTC 107879
||| | ||| |||||| || | |||| || |||| ||| |||||||||| || |||||
Sbjct 1413 AAGCCACCAAAGACTTCCAGA-AGGCCGTGGAGGCTATTCTTTCCTGCTTTCCAAATGTG 1471
Query 107880 TTCATGGCCAGTA-AGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGA 107938
||||| |||||| ||| | || |||| |||||||| |||||| ||||||| || ||
Sbjct 1472 TTCATACCCAGTAGAGTAGAAAGCG-TGGTATATGCCTCATGGTCCCGAGTGCAGGCAGA 1530
Query 107939 CCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA-TGGAAGTACTTACTGAATA 107997
||||||| ||| |||| |||| || | ||| ||| |||| |||| | || || |
Sbjct 1531 TTTGAACTGCATGAAAGATCTGCTGCACT-CACAGGTCCAGTGGAGGTACCTGCTTAACA 1589
Query 107998 CATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGT 108057
| || ||| ||||||||||||| || ||||| || ||||| | ||| || |||
Sbjct 1590 CCTGTGGGGCAGACTTCCCCATCAAAACCAACAGAGAAATGGTTCAGGCACTGAAGGCCC 1649
Query 108058 TGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGA 108117
| || || | ||||| ||||||||||||||| | ||| | ||| ||| ||||||
Sbjct 1650 TCAACGGGAGAAACAGCATGGAGTCTGAGGTAACCAATGACTACAAGAAACGCCGCTGGC 1709
Query 108118 AATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGA---CCCTC 108174
| || | || | || || || |||| | | | | | ||||| | ||| |
Sbjct 1710 AGTATCATTACAATGTAAC-TAC-TTCTGTCATCAAGACGGACG-TGAAGAAACGCCCCC 1766
Query 108175 CCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTG 108234
| || || |||||||||||||| |||||||| ||||||| | | |||||||||
Sbjct 1767 CACCCATTAGCAGCCCCATGTTCACAGGAAATGCCTACTTTGTGGTCACCAGAGCCTTTG 1826
Query 108235 TCCAACATGT 108244
| |||||||
Sbjct 1827 TGAAACATGT 1836
Score = 105 bits (116), Expect = 5e-18
Identities = 85/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 107712 TTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTG 107771
||||||||||||||||| |||||| ||||||||||| |||| | ||||| || || ||
Sbjct 1126 TTCCCCATTGCCTACTCCATGGTGATCCATGAGAAGGTTGAGATGTTTGAGCGACTCCTA 1185
Query 107772 CGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGG 107814
||||| || ||| ||||||||||| |||||||| || ||||
Sbjct 1186 CGAGCTGTTTATAATCCTCAGAACATCTACTGTGTGCATGTGG 1228
>seq149956
Length=14165
Score = 105 bits (116), Expect = 5e-18
Identities = 85/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 107712 TTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTG 107771
|| |||||||||||||| |||||| |||||||||||||||| | |||||| | || ||
Sbjct 11855 TTTCCCATTGCCTACTCCATGGTGATCCATGAGAAGATTGAGATGTTTGAAAGACTCCTA 11914
Query 107772 CGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGG 107814
||||| || ||| ||||||||||| |||||||| || ||||
Sbjct 11915 CGAGCTGTTTATAATCCTCAGAACATCTACTGTGTGCATGTGG 11957
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347569756279482
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |