Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq70617 172 4e-38 seq149956 105 5e-18 >seq70617 Length=8941 Score = 172 bits (190), Expect = 4e-38 Identities = 303/430 (70%), Gaps = 11/430 (3%) Strand=Plus/Plus Query 107820 AAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTC 107879 ||| | ||| |||||| || | |||| || |||| ||| |||||||||| || ||||| Sbjct 1413 AAGCCACCAAAGACTTCCAGA-AGGCCGTGGAGGCTATTCTTTCCTGCTTTCCAAATGTG 1471 Query 107880 TTCATGGCCAGTA-AGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGA 107938 ||||| |||||| ||| | || |||| |||||||| |||||| ||||||| || || Sbjct 1472 TTCATACCCAGTAGAGTAGAAAGCG-TGGTATATGCCTCATGGTCCCGAGTGCAGGCAGA 1530 Query 107939 CCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA-TGGAAGTACTTACTGAATA 107997 ||||||| ||| |||| |||| || | ||| ||| |||| |||| | || || | Sbjct 1531 TTTGAACTGCATGAAAGATCTGCTGCACT-CACAGGTCCAGTGGAGGTACCTGCTTAACA 1589 Query 107998 CATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGT 108057 | || ||| ||||||||||||| || ||||| || ||||| | ||| || ||| Sbjct 1590 CCTGTGGGGCAGACTTCCCCATCAAAACCAACAGAGAAATGGTTCAGGCACTGAAGGCCC 1649 Query 108058 TGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGA 108117 | || || | ||||| ||||||||||||||| | ||| | ||| ||| |||||| Sbjct 1650 TCAACGGGAGAAACAGCATGGAGTCTGAGGTAACCAATGACTACAAGAAACGCCGCTGGC 1709 Query 108118 AATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGA---CCCTC 108174 | || | || | || || || |||| | | | | | ||||| | ||| | Sbjct 1710 AGTATCATTACAATGTAAC-TAC-TTCTGTCATCAAGACGGACG-TGAAGAAACGCCCCC 1766 Query 108175 CCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTG 108234 | || || |||||||||||||| |||||||| ||||||| | | ||||||||| Sbjct 1767 CACCCATTAGCAGCCCCATGTTCACAGGAAATGCCTACTTTGTGGTCACCAGAGCCTTTG 1826 Query 108235 TCCAACATGT 108244 | ||||||| Sbjct 1827 TGAAACATGT 1836 Score = 105 bits (116), Expect = 5e-18 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 107712 TTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTG 107771 ||||||||||||||||| |||||| ||||||||||| |||| | ||||| || || || Sbjct 1126 TTCCCCATTGCCTACTCCATGGTGATCCATGAGAAGGTTGAGATGTTTGAGCGACTCCTA 1185 Query 107772 CGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGG 107814 ||||| || ||| ||||||||||| |||||||| || |||| Sbjct 1186 CGAGCTGTTTATAATCCTCAGAACATCTACTGTGTGCATGTGG 1228 >seq149956 Length=14165 Score = 105 bits (116), Expect = 5e-18 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 107712 TTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTG 107771 || |||||||||||||| |||||| |||||||||||||||| | |||||| | || || Sbjct 11855 TTTCCCATTGCCTACTCCATGGTGATCCATGAGAAGATTGAGATGTTTGAAAGACTCCTA 11914 Query 107772 CGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGG 107814 ||||| || ||| ||||||||||| |||||||| || |||| Sbjct 11915 CGAGCTGTTTATAATCCTCAGAACATCTACTGTGTGCATGTGG 11957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347569756279482