Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 455 3e-123
seq55784 118 9e-22
>seq137229
Length=11157
Score = 455 bits (504), Expect = 3e-123
Identities = 1082/1629 (66%), Gaps = 23/1629 (1%)
Strand=Plus/Plus
Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGAT 22425
||| | ||||||||| | | || | | || || ||| ||| |||||| || |
Sbjct 1572 CTGAATGGACCCGTTGTGGCCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGTCCTCT 1631
Query 22426 GGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCG 22485
| ||||| ||||||| ||||||| | || || | |||||||| || || | ||| |
Sbjct 1632 CTCTGTCAAGTCTTTGAGCAGATGAGGATTGACGATCTGAAACTCTCCAGAGAGGACCCT 1691
Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545
||| ||| |||||| ||| | ||||||| || || ||||| ||||| ||||| ||
Sbjct 1692 GCGGGTGTAGATGTTGCTGGTGTAGGGTTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 1751
Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT 22605
||| || || || |||||||| |||| ||| || ||| |||| ||||||||| | ||
Sbjct 1752 GGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCGAT 1811
Query 22606 TTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATC 22665
|| ||| |||| ||||||| || | |||| |||||| || |||||||| ||
Sbjct 1812 CTTCTCCTTCAGCAGTTTCCAGTCCAACCGGTCGGTGGGCGTC---TTCTCCCACATGTC 1868
Query 22666 GTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATAT 22725
||| |||| | ||| || | || |||||||||||| ||||| || || | |
Sbjct 1869 GTACTGCAGGATGCCCTTGCTGACGGGAGAGCCTTCGTACGTCTCGTAGGGGCC-GAGCT 1927
Query 22726 C-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCT 22784
| ||||| || |||||||||||||| ||| |||| || || ||||| ||||| |
Sbjct 1928 CAGCGGCCAGAATGCAGCTCGCCTCCAGAGCGGCGTAGTAAATGGTCTCAAAGATCTGAA 1987
Query 22785 TGTTCAATTCGGC--GGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTC 22842
|||||| | || || | |||||| | || |||||| | | ||| || ||
Sbjct 1988 TGTTCA--GCAGCTGAGCTTCAGGGCTTTCAAATGGGTAACGCATGAGGATGAAGGCATC 2045
Query 22843 CGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTC 22902
|||| ||| || || || || || || || | || | || ||| | ||| ||
Sbjct 2046 TGCCAAACCTTGTACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTC 2105
Query 22903 GGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGT 22962
|||| |||||| | || || || | |||||||||| || | | ||| ||
Sbjct 2106 AGGCACAGGATAGAAGTTTACTTCAATGATCTTGTTCAAGTTCTTGACGATTACTTTGGT 2165
Query 22963 TATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT--TGTACAACAAACTTGTTGACG 23020
| |||||||| ||||| | | | | || || ||||||
Sbjct 2166 CACGGATGCTAGTTTTTCAAAGTC--AAACGTCTGCTCAGGGGTGACGTACATGTTGAGC 2223
Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080
||||| ||||| |||||||| ||||| |||||||| | | ||||| || ||||||||
Sbjct 2224 GCGATTGAGGCCAGATTGCAGACGGCTACCTCGTCGTGGCTGGTGTATTCAACAATTTCT 2283
Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140
|| || || ||||| |||| || ||||||| ||| |||||||| || || |||||
Sbjct 2284 GTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCAG 2343
Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200
| || ||||| |||||||| ||||| || || || ||| ||||| || || || ||
Sbjct 2344 GCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCAATAATGGCATGC 2403
Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTAC 23260
|||| ||||| | || ||| | ||| || || | ||| || |||
Sbjct 2404 CACACCTGTTGAGCCTTCACCACACGCTTGACCCTCCCGTCCTTCTCATAGGAGGTGTAG 2463
Query 23261 AACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATG 23320
| | ||||| || | || | || ||| |||| ||||| | | | ||||||||
Sbjct 2464 AGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATC 2523
Query 23321 AGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCG 23380
||| ||| | || || || | |||| || || || || ||||| | ||
Sbjct 2524 AGAGACCAGTCTTGGTTGCCCTCTACTCTCTTCATGAACAGGTCAGGGATCCACATGCCG 2583
Query 23381 TAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAG 23440
||||| || || | ||| | | |||||| || || |||||||| |||| |||| |||
Sbjct 2584 TAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAG 2643
Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500
|| ||||| || ||||| ||||| ||||| | ||| || || || |||||||| ||
Sbjct 2644 TCAAACACATCAAAGTGCCAGGGCTCTAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTC 2703
Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560
|| ||||| || || ||||| ||||| |||||||| ||||| ||||| || ||||| |||
Sbjct 2704 CCACCCTGGTCCACATAACGTGCCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCG 2763
Query 23561 TTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617
||||| |||| ||| || | ||| || ||| || | | | |||
Sbjct 2764 TTGGAGTTGCCGTTGGTGCCAGCAATGTAGCTC---CCCGTTGATCTGATGCAGCTGACG 2820
Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677
| ||| |||||||| | || || || || | |||||||| |||| |||||||||
Sbjct 2821 GCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGCGCATTGCTTCAAGGTGTCGTAG 2880
Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACA--TTTGCGCTT 23735
||||| ||||||||||| ||||| | |||| |||||| || |||| | || ||
Sbjct 2881 ATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGTGGCCTA 2940
Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTA 23795
| | || | || ||| || || || |||||| || || | | ||||| |
Sbjct 2941 TTG--GTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCA 2998
Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855
| || || || |||||| | || ||||| || | | | || || || | | || ||||
Sbjct 2999 GGTTATAAGTCTCGATGACTGCGTCAATATCATTTTCATGGATCCCAACAGACACTCGCA 3058
Query 23856 TCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTT 23915
| | ||||| || || | |||| || |||||| || || ||||| || || || |
Sbjct 3059 TGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTTATCTTCAACAGGTAGGACCGCT 3118
Query 23916 GCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAAT 23975
|| || || || ||||| ||| ||| || || | ||| | ||||||||| |
Sbjct 3119 CCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATTATGGCCGAGT 3178
Query 23976 TCAAACGGT 23984
| | ||||
Sbjct 3179 TGAGGCGGT 3187
>seq55784
Length=9571
Score = 118 bits (130), Expect = 9e-22
Identities = 121/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106
|||||| |||||| |||||||||||| || || || || |||||||| | || || ||
Sbjct 2599 CACCTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGT 2658
Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166
||||| ||| ||||||||| || | ||||| | ||||||||||||||||| || ||
Sbjct 2659 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGT 2718
Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204
|| || || ||| ||||| ||||| || ||||||
Sbjct 2719 ACCGGTTTCTGTCTGAGACTCAATGATGGCGTGCCACA 2756
Score = 107 bits (118), Expect = 2e-18
Identities = 116/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401
|| || ||| |||| || || || || ||||| | || ||||||| || | ||| | |
Sbjct 3126 TCCACTCGTTTCATGAACAGGTCAGGGATCCACATGCCGAAGAACAGGTCTCTGGCTCTC 3185
Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461
||| ||||| ||||||||||| ||||| || || ||||| ||||| || |||||||
Sbjct 3186 TGCTCTTCTTTACCGGTGTTCTTCTTCAAGTCTAAGAAGTCAAACACATCGAAATGCCAC 3245
Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
||||| ||||| || || || || || |||||||
Sbjct 3246 GGCTCCAGGTACACAGCGAAGGCCCCGGGTCTCT 3279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444848717428560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |