Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq137229 455 3e-123 seq55784 118 9e-22 >seq137229 Length=11157 Score = 455 bits (504), Expect = 3e-123 Identities = 1082/1629 (66%), Gaps = 23/1629 (1%) Strand=Plus/Plus Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGAT 22425 ||| | ||||||||| | | || | | || || ||| ||| |||||| || | Sbjct 1572 CTGAATGGACCCGTTGTGGCCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGTCCTCT 1631 Query 22426 GGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCG 22485 | ||||| ||||||| ||||||| | || || | |||||||| || || | ||| | Sbjct 1632 CTCTGTCAAGTCTTTGAGCAGATGAGGATTGACGATCTGAAACTCTCCAGAGAGGACCCT 1691 Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545 ||| ||| |||||| ||| | ||||||| || || ||||| ||||| ||||| || Sbjct 1692 GCGGGTGTAGATGTTGCTGGTGTAGGGTTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 1751 Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT 22605 ||| || || || |||||||| |||| ||| || ||| |||| ||||||||| | || Sbjct 1752 GGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCGAT 1811 Query 22606 TTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATC 22665 || ||| |||| ||||||| || | |||| |||||| || |||||||| || Sbjct 1812 CTTCTCCTTCAGCAGTTTCCAGTCCAACCGGTCGGTGGGCGTC---TTCTCCCACATGTC 1868 Query 22666 GTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATAT 22725 ||| |||| | ||| || | || |||||||||||| ||||| || || | | Sbjct 1869 GTACTGCAGGATGCCCTTGCTGACGGGAGAGCCTTCGTACGTCTCGTAGGGGCC-GAGCT 1927 Query 22726 C-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCT 22784 | ||||| || |||||||||||||| ||| |||| || || ||||| ||||| | Sbjct 1928 CAGCGGCCAGAATGCAGCTCGCCTCCAGAGCGGCGTAGTAAATGGTCTCAAAGATCTGAA 1987 Query 22785 TGTTCAATTCGGC--GGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTC 22842 |||||| | || || | |||||| | || |||||| | | ||| || || Sbjct 1988 TGTTCA--GCAGCTGAGCTTCAGGGCTTTCAAATGGGTAACGCATGAGGATGAAGGCATC 2045 Query 22843 CGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTC 22902 |||| ||| || || || || || || || | || | || ||| | ||| || Sbjct 2046 TGCCAAACCTTGTACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTC 2105 Query 22903 GGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGT 22962 |||| |||||| | || || || | |||||||||| || | | ||| || Sbjct 2106 AGGCACAGGATAGAAGTTTACTTCAATGATCTTGTTCAAGTTCTTGACGATTACTTTGGT 2165 Query 22963 TATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT--TGTACAACAAACTTGTTGACG 23020 | |||||||| ||||| | | | | || || |||||| Sbjct 2166 CACGGATGCTAGTTTTTCAAAGTC--AAACGTCTGCTCAGGGGTGACGTACATGTTGAGC 2223 Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| ||||| |||||||| ||||| |||||||| | | ||||| || |||||||| Sbjct 2224 GCGATTGAGGCCAGATTGCAGACGGCTACCTCGTCGTGGCTGGTGTATTCAACAATTTCT 2283 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || || ||||| |||| || ||||||| ||| |||||||| || || ||||| Sbjct 2284 GTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCAG 2343 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | || ||||| |||||||| ||||| || || || ||| ||||| || || || || Sbjct 2344 GCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCAATAATGGCATGC 2403 Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTAC 23260 |||| ||||| | || ||| | ||| || || | ||| || ||| Sbjct 2404 CACACCTGTTGAGCCTTCACCACACGCTTGACCCTCCCGTCCTTCTCATAGGAGGTGTAG 2463 Query 23261 AACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATG 23320 | | ||||| || | || | || ||| |||| ||||| | | | |||||||| Sbjct 2464 AGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATC 2523 Query 23321 AGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCG 23380 ||| ||| | || || || | |||| || || || || ||||| | || Sbjct 2524 AGAGACCAGTCTTGGTTGCCCTCTACTCTCTTCATGAACAGGTCAGGGATCCACATGCCG 2583 Query 23381 TAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAG 23440 ||||| || || | ||| | | |||||| || || |||||||| |||| |||| ||| Sbjct 2584 TAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAG 2643 Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || ||||| || ||||| ||||| ||||| | ||| || || || |||||||| || Sbjct 2644 TCAAACACATCAAAGTGCCAGGGCTCTAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTC 2703 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560 || ||||| || || ||||| ||||| |||||||| ||||| ||||| || ||||| ||| Sbjct 2704 CCACCCTGGTCCACATAACGTGCCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCG 2763 Query 23561 TTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617 ||||| |||| ||| || | ||| || ||| || | | | ||| Sbjct 2764 TTGGAGTTGCCGTTGGTGCCAGCAATGTAGCTC---CCCGTTGATCTGATGCAGCTGACG 2820 Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677 | ||| |||||||| | || || || || | |||||||| |||| ||||||||| Sbjct 2821 GCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGCGCATTGCTTCAAGGTGTCGTAG 2880 Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACA--TTTGCGCTT 23735 ||||| ||||||||||| ||||| | |||| |||||| || |||| | || || Sbjct 2881 ATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGTGGCCTA 2940 Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTA 23795 | | || | || ||| || || || |||||| || || | | ||||| | Sbjct 2941 TTG--GTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCA 2998 Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855 | || || || |||||| | || ||||| || | | | || || || | | || |||| Sbjct 2999 GGTTATAAGTCTCGATGACTGCGTCAATATCATTTTCATGGATCCCAACAGACACTCGCA 3058 Query 23856 TCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTT 23915 | | ||||| || || | |||| || |||||| || || ||||| || || || | Sbjct 3059 TGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTTATCTTCAACAGGTAGGACCGCT 3118 Query 23916 GCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAAT 23975 || || || || ||||| ||| ||| || || | ||| | ||||||||| | Sbjct 3119 CCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATTATGGCCGAGT 3178 Query 23976 TCAAACGGT 23984 | | |||| Sbjct 3179 TGAGGCGGT 3187 >seq55784 Length=9571 Score = 118 bits (130), Expect = 9e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| |||||| |||||||||||| || || || || |||||||| | || || || Sbjct 2599 CACCTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGT 2658 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||||| || | ||||| | ||||||||||||||||| || || Sbjct 2659 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGT 2718 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || || || ||| ||||| ||||| || |||||| Sbjct 2719 ACCGGTTTCTGTCTGAGACTCAATGATGGCGTGCCACA 2756 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || || ||| |||| || || || || ||||| | || ||||||| || | ||| | | Sbjct 3126 TCCACTCGTTTCATGAACAGGTCAGGGATCCACATGCCGAAGAACAGGTCTCTGGCTCTC 3185 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 ||| ||||| ||||||||||| ||||| || || ||||| ||||| || ||||||| Sbjct 3186 TGCTCTTCTTTACCGGTGTTCTTCTTCAAGTCTAAGAAGTCAAACACATCGAAATGCCAC 3245 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| ||||| || || || || || ||||||| Sbjct 3246 GGCTCCAGGTACACAGCGAAGGCCCCGGGTCTCT 3279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444848717428560