Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq137229 511 6e-140 seq51583 93.3 5e-14 >seq137229 Length=11157 Score = 511 bits (566), Expect = 6e-140 Identities = 1297/1964 (66%), Gaps = 29/1964 (1%) Strand=Plus/Plus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| ||||| || |||| | | |||||| || || || | || ||||| || || Sbjct 1603 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTG 1662 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | || || |||||||| | || || || ||||| || || ||||| || ||||| Sbjct 1663 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCG 1722 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 1723 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 1782 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | ||| || || | |||| | ||| || || || || ||| ||| | | | | Sbjct 1783 AGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTTCCAGTCCAACCGG 1842 Query 62565 TCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTA 62617 || | || | | ||| || || || || || || ||| || Sbjct 1843 TCGGTGGGCGTCTTCTCCCACATGTCG-------TACTGCAGGATGCCCTTGCTGACGGG 1895 Query 62618 CGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAA 62677 || ||| | || || || || || || || | || || | || |||||||| | Sbjct 1896 AGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGAATGCAGCTCGCCTCCAG 1955 Query 62678 TGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATC 62737 || |||| |||||||| |||||||||| | || || || ||||| ||||| || Sbjct 1956 AGCGGCGTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTTTC 2015 Query 62738 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 |||||| ||| | ||| || || || || || || ||||| |||||||| || || || Sbjct 2016 AAATGGGTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATTGG 2075 Query 62798 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62857 || || | ||| || || | || ||||| || | |||||| | || | || || || Sbjct 2076 CCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGCACAGGATAGAAGTTTACTTCAATGAT 2135 Query 62858 TTTATTGAGATTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTGAGAAAATCAAA- 62914 || || | || |||| ||||||||| ||| || || ||||| ||| ||||| Sbjct 2136 CTTGTTCAAGTTCTTGACGATTACTTTGGTCACGGATGCT--AGTTTTTCAAAGTCAAAC 2193 Query 62915 -TC-GCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACC 62972 || || || | || ||||||| | || | || |||||||| || ||||||||| Sbjct 2194 GTCTGCTCAGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTACC 2253 Query 62973 TCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTC 63030 || | | || | |||| | || || ||||| || || || ||||||| || | Sbjct 2254 TCGTCGTGGCTGGTG--TATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGC 2311 Query 63031 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 63090 | | ||| || || || ||||| ||| || || || || || || ||| |||| |||| Sbjct 2312 CCAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTAC 2371 Query 63091 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT 63150 ||||||| |||| || || ||||| || | ||| || | ||||||| | | | | Sbjct 2372 CAGTTTCTGTCTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGCT 2431 Query 63151 TGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACAT 63210 || |||| || | || || || || | ||| ||||| || ||||| | Sbjct 2432 TGACCCTCCCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACT 2491 Query 63211 TGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTC 63270 ||||| | || || || | |||||||||| ||||| ||| || ||| |||| Sbjct 2492 CGTCCAGCCCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTC 2551 Query 63271 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCC 63329 ||||| || || ||||| ||||| | || || || || ||||| | ||| || ||| Sbjct 2552 TCTTCATGAACAGGTCAGGGATCCACA-TGCCGTAGAAAAGGTCTCTGGCTCTCTGCTCC 2610 Query 63330 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63389 || ||||| || ||||| || || || ||||| | | | |||| | ||||| || || Sbjct 2611 TCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCT 2670 Query 63390 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63449 | ||| ||||| | | || || | ||||| || ||||| || | || | || || Sbjct 2671 AGGTACATGGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTGCCGTA 2730 Query 63450 TTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATA 63509 || || |||||||||| ||| || | | ||||| || | || ||||| || | || Sbjct 2731 TTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATG 2790 Query 63510 TAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63569 |||| || | | | || || | | | ||| || || || || || ||| Sbjct 2791 TAGCTCCCCGTTGATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAG 2850 Query 63570 ATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTA 63629 || | |||||| | || || ||||| ||||||||||| ||||| || || ||||| Sbjct 2851 ATGAGGGCGCATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCG 2910 Query 63630 AGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAA 63689 || | || ||||| |||| || | | | | ||||| || || || | |||||||| Sbjct 2911 AGCAAGAAGCAGCTGGACAGCTGTGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAG 2970 Query 63690 GCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC 63749 ||||| || ||||| || || || || || || || ||||| || ||| ||| ||||| Sbjct 2971 GCGTGGGTGAACCACTTCTCCGACAGCAGGTTATAAGTCTCGATGACTGCGTCAATATCA 3030 Query 63750 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTG 63809 || ||| || || || | || ||||| | ||||||||| || | || | | |||| Sbjct 3031 TTTTCATGGATCCCAACAGACACTCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTG 3090 Query 63810 TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63869 |||||| ||||||| |||||| |||| ||| || || ||||| ||||||| || Sbjct 3091 CCGTTTATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAG 3150 Query 63870 AAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCC 63929 || |||| ||| |||| || |||| ||||| || || | | ||| || | Sbjct 3151 AAATCTCTGTCGAAAATTATGGCCGAGTTGAGGCGGTCTTTGTTCTCAAGAACGATGTTG 3210 Query 63930 ATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAA 63988 | || | ||| || || || ||||| || | | |||| || || | |||||| | Sbjct 3211 AGTGT-CTGCTTGGAGATCATGGGAGAGTGCTGTCTATTTAATGGGTTGATGTAGTTGTA 3269 Query 63989 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGC 64048 | ||||||||||| ||||| || | || || || || ||||| || || || | || Sbjct 3270 CAGGTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTGGAGACAGC 3329 Query 64049 TATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTC 64108 || | || || || ||||| || || || |||| || || |||||| | || || Sbjct 3330 GATCCGCGCAGCGAGGATGGCGTAGTCGGGGTGTTTAGTCGTGAGAGTGGCGGTGATCTC 3389 Query 64109 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTT 64168 || ||||| ||||| | || || || || || ||| | || | || || || ||||| Sbjct 3390 TGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCACTGTACAAACCCTGGATCACCTT 3449 Query 64169 CATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAAT 64228 ||| | || | ||||| | || | ||| | || ||||||| || || Sbjct 3450 CATCGTAATCTGGGCCGGATCCACGAAGTCAGAGTTAAGTCCGTAGCACAGCTTCTGGAT 3509 Query 64229 ACGAGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCAT 64272 |||||| ||||||||||| ||||||||| |||| | ||||| Sbjct 3510 ACGAGAGGTGATTTTATCGAACATGACACGCTCCTGGCGTCCAT 3553 >seq51583 Length=2687 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || || ||||| ||||| | ||| | Sbjct 842 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGGCCTCTCTTCT 901 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || ||||| || || || || || ||||||||||| || || ||||| |||| Sbjct 902 TCAGCCAGAAGATGGAGGCAAAGGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 961 Query 33724 C 33724 | Sbjct 962 C 962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628521018125040