Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq137229 526 3e-144 seq154442 87.8 2e-12 >seq137229 Length=11157 Score = 526 bits (582), Expect = 3e-144 Identities = 1299/1964 (66%), Gaps = 29/1964 (1%) Strand=Plus/Plus Query 65118 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 65177 ||||| ||||| || |||| | | |||||| || || || | || ||||| ||||| Sbjct 1603 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTG 1662 Query 65178 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 65237 || | ||||| |||||||| | || || || ||||| || || ||||| || ||||| Sbjct 1663 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCG 1722 Query 65238 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 65297 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 1723 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 1782 Query 65298 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 65357 | ||| || || | |||| | ||| || || || || ||| ||| | | | | Sbjct 1783 AGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTTCCAGTCCAACCGG 1842 Query 65358 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 65415 || | || | | | || || || || || ||| || || | Sbjct 1843 TCGGTGGG--CGTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGC 1900 Query 65416 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 65475 || | || || ||||| || || || | || || || |||||||| | || Sbjct 1901 CTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGAATGCAGCTCGCCTCCAGAGCGG 1960 Query 65476 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 65535 |||| |||||||| || ||||||| | || || || ||||| |||| ||||||| Sbjct 1961 CGTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTTTCAAATG 2020 Query 65536 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 65595 | ||| | ||| || || || ||||| || ||||| |||||||| || || || || | Sbjct 2021 GGTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATTGGCCTGT 2080 Query 65596 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 65655 | | ||| || || | || ||||| || | |||||| | || | || || || || | Sbjct 2081 GGCGCTTGTTGGACTTCTCTGCTTCAGGCACAGGATAGAAGTTTACTTCAATGATCTTGT 2140 Query 65656 TGAGATTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTGAGAAAATCAAA--TC-G 65710 | | || |||| ||||||||| ||| || || ||||| ||| ||||| || | Sbjct 2141 TCAAGTTCTTGACGATTACTTTGGTCACGGATGCT--AGTTTTTCAAAGTCAAACGTCTG 2198 Query 65711 CTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT- 65769 |||| | || ||||||| | || | || |||||||| || ||||||||||| | Sbjct 2199 CTCAGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTC 2258 Query 65770 -TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 65828 | || | |||| | || || ||||| || || || |||||||||| || | | Sbjct 2259 GTGGCTGGTG--TATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGA 2316 Query 65829 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 65888 || || || || ||||| ||| || || || || || || ||| |||| ||||||||| Sbjct 2317 TTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTT 2376 Query 65889 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTAT 65948 || |||| || || ||||| || | ||| || | ||||||| | | | ||| Sbjct 2377 TCTGTCTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGCTTGACC 2436 Query 65949 CTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 66008 ||| || | || || || || | ||| ||||| || ||||| | |||| Sbjct 2437 CTCCCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCC 2496 Query 66009 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 66068 | || || || || | |||||||||| ||||| ||| || ||| |||| ||| Sbjct 2497 AGCCCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTCTTC 2556 Query 66069 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTT 66127 || || || ||||| ||||| | || || || | ||||||| ||| || ||||| || Sbjct 2557 ATGAACAGGTCAGGGATCCACA-TGCCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTT 2615 Query 66128 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTA 66187 ||| || ||||| || || || ||||| | | | |||| | ||||| || || | ||| Sbjct 2616 TCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTA 2675 Query 66188 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 66247 ||||| | | || || | ||||| || ||||| || | || | || || || || Sbjct 2676 CATGGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTGCCGTATTGTT 2735 Query 66248 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 66307 |||||||||| ||| || | | || ||||| | || ||||| || | || ||||| Sbjct 2736 GTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCT 2795 Query 66308 TCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 66367 || ||| | || || | | | ||| || || || || || ||||| | Sbjct 2796 CCCCGTTGATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAG 2855 Query 66368 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 66427 |||||| | || || || || |||||||| || || || || || ||||| || | Sbjct 2856 GGCGCATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAA 2915 Query 66428 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 66487 || ||||| |||| || | | | | ||||| || || || | |||||||| ||||| Sbjct 2916 GAAGCAGCTGGACAGCTGTGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTG 2975 Query 66488 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 66547 || ||||| || || || || || || || ||||| || ||| ||| ||||| || Sbjct 2976 GGTGAACCACTTCTCCGACAGCAGGTTATAAGTCTCGATGACTGCGTCAATATCATTTTC 3035 Query 66548 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 66607 ||| || || || | || ||||| | ||||||||| || | || | | ||| ||| Sbjct 3036 ATGGATCCCAACAGACACTCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTT 3095 Query 66608 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 66667 ||| ||||||| |||||| |||| ||| || || ||||| ||||||| || || || Sbjct 3096 TATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATC 3155 Query 66668 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT 66727 || ||| |||| || |||||||||| || |||||| | | | | ||| | Sbjct 3156 TCTGTCGAAAATTATGGCCGAGTTGAGGCGGTC------TTTGTTCTCAAGAACGATGTT 3209 Query 66728 AA-----TACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAA 66781 | | ||| || || || ||||| || | | |||| || |||| |||||| | Sbjct 3210 GAGTGTCTGCTTGGAGATCATGGGAGAGTGCTGTCTATTTAATGGGTTGATGTAGTTGTA 3269 Query 66782 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGC 66841 | ||||||||||| ||||| || | || || || |||||||| || || || || || Sbjct 3270 CAGGTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTGGAGACAGC 3329 Query 66842 TATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTC 66901 || | || || | ||||| || || || |||| || || |||||| | || || Sbjct 3330 GATCCGCGCAGCGAGGATGGCGTAGTCGGGGTGTTTAGTCGTGAGAGTGGCGGTGATCTC 3389 Query 66902 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 66961 || ||||| ||||| | || || || || || ||| | || | || ||||| ||||| Sbjct 3390 TGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCACTGTACAAACCCTGGATCACCTT 3449 Query 66962 CATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAAT 67021 ||| | || | ||||| | |||| ||| | || || || | || || Sbjct 3450 CATCGTAATCTGGGCCGGATCCACGAAGTCAGAGTTAAGTCCGTAGCACAGCTTCTGGAT 3509 Query 67022 ACGAGATGTGATTTTATCAAACATGACATTTTCCTTGTATCCAT 67065 |||||| ||||||||||| ||||||||| |||| | ||||| Sbjct 3510 ACGAGAGGTGATTTTATCGAACATGACACGCTCCTGGCGTCCAT 3553 >seq154442 Length=3669 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 9264 TGCAAGAACAGATTGATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCA 9323 |||| || || |||| ||| |||| ||||| ||||| ||||| | | | || || Sbjct 3077 TGCAGAAATAGGTTGACGATGTCCAGGTAGAGGTTGATGGAGGCCAGGATGTGCTCCTCG 3018 Query 9324 GGCGAGAGCTTATGTATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGG 9383 |||||||||| | || || ||| ||||||||||| ||||| || ||||| || ||| Sbjct 3017 GGCGAGAGCTGCTTCATCAGCAGGTGGGTGTCATAGATGATGAAGCCACAGAAGACCAGG 2958 Query 9384 GCCCCAAAAGCAGACAGGACCAGCTC 9409 ||||| |||||| ||||||||| Sbjct 2957 GCCCCTGCTCCAGACATGACCAGCTC 2932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656817844338120