Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq60745 150 2e-31 seq77726 84.2 2e-11 >seq60745 Length=27421 Score = 150 bits (166), Expect = 2e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || |||| ||||||||||| || || ||||| ||||||||||||||||| || || Sbjct 2721 AGTCCTGTGATGTGAGCGATCATGTAGGTGAGGAGTGCGTAGCTGGCGATGTTGAAAGGC 2662 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 |||||||||||||||||| | || | |||||||||||| || |||||||| || | | Sbjct 2661 ACCCCGAGGCCCATGTCGCCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACAC 2602 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||||| ||||||||||| |||| || || || || ||||| Sbjct 2601 ACGTAGAACTGACACAAGGCGTGGCAGGGGGGCAGCGCCAT 2561 >seq77726 Length=2370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 || ||||| | | ||| || || |||||| || ||| | ||||| |||||||||||| Sbjct 1908 TCCCTGCTGAGGACAATGTTGATCCTGTTCTTCAAAGGTCTGTTCTTCTCAGGGATGGAA 1967 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCT 3116 |||||||||||| | ||||| || |||||||||| Sbjct 1968 AACCATGTTCTTCTACCCATGATCACCACATTCT 2001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426917369750640