Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq129856 165 6e-36 >seq129856 Length=1559 Score = 165 bits (182), Expect = 6e-36 Identities = 179/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 91799 CATTTCCCTGTCTTTTCCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACAA 91858 || ||||| ||| |||||||| ||||||| | ||||||||| |||||||| | | ||| Sbjct 794 CACTTCCCCACCTTCTCCTGCAAGGAGGACTGCGACATCATCACGGACACTGCC-GCCAA 852 Query 91859 -CTGGAACAAAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCT 91917 || || | || |||||||||||| || ||| ||| |||||||| || || ||||| Sbjct 853 GCTCGAGCGCAGCTCCTTCTACTGGGGCCCCCTGGAGGTGGAGGAGGCCCACCGCATGCT 912 Query 91918 GCGCAACTCGGCACTGGGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGTT 91977 ||| || | | ||||||||||| ||||| || || ||| |||| ||||||||||| || Sbjct 913 GCGGGACGCCCCGCTGGGCAGCTTCCTCATCCGCGACAGCCGGCAGAAGGACGTCTTCTT 972 Query 91978 CACGCTGTCGTATCACTCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAG 92032 ||||||||| || ||| || ||| || ||||| ||| | || || |||||| Sbjct 973 CACGCTGTCCTACCACGGCAAGAGCGGGCCGGTCAGCGTGCGCATCGACTACAAG 1027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355518569365279