Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq137229 553 2e-152 seq51583 111 2e-19 >seq137229 Length=11157 Score = 553 bits (612), Expect = 2e-152 Identities = 1308/1964 (67%), Gaps = 29/1964 (1%) Strand=Plus/Plus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 ||||| ||||| || |||| | | |||||| || || || | || ||||| ||||| Sbjct 1603 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTG 1662 Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116 || | ||||| |||||||| | || || || ||||| || || ||||| || ||||| Sbjct 1663 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCG 1722 Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176 | || || || || |||| || || || || || || || ||||| || |||| || Sbjct 1723 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 1782 Query 79177 AAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGA 79236 | ||| || || | |||| ||| || || || || || ||| ||| | | Sbjct 1783 AGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTTCCAGTCCAACCGG 1842 Query 79237 TCAGACGG-GACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCC 79295 || | || | | | | ||| | || || || || || || || || || || || Sbjct 1843 TCGGTGGGCGTCTTC-TCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCC 1901 Query 79296 TGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCC 79355 | ||| || || || || || || |||| | || |||||||| | || | Sbjct 1902 TTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGAATGCAGCTCGCCTCCAGAGCGGC 1961 Query 79356 GTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGG 79415 ||| |||||||| || || |||| | || || || ||||| |||| |||||||| Sbjct 1962 GTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTTTCAAATGG 2021 Query 79416 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 ||| | ||| || || || ||||| || ||||| |||||||| || || || || || Sbjct 2022 GTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATTGGCCTGTG 2081 Query 79476 TCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 79535 | ||| || || | || ||||| || | |||||| | || | || || || || || Sbjct 2082 GCGCTTGTTGGACTTCTCTGCTTCAGGCACAGGATAGAAGTTTACTTCAATGATCTTGTT 2141 Query 79536 GAGATTCCTGACTATTACTTTGACCAC--ATCCTTTAGTTTGAGAAAATCAAATCGTC-- 79591 | ||| |||| ||||||||| ||| || || ||||| ||| ||||| |||| Sbjct 2142 CAAGTTCTTGACGATTACTTTGGTCACGGATGCT--AGTTTTTCAAAGTCAAA-CGTCTG 2198 Query 79592 --CATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT- 79648 || | || ||||||| | ||||| || |||||||| || ||||||||||| | Sbjct 2199 CTCAGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTC 2258 Query 79649 -TAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAA 79707 | || | |||| | ||||| ||||||||||| || |||| ||||| || | | Sbjct 2259 GTGGCTGGTG--TATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGA 2316 Query 79708 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTT 79767 || || || || ||||| ||| || || || || || || ||| | || ||||||||| Sbjct 2317 TTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTT 2376 Query 79768 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTAT 79827 || |||| || || ||||| || | ||| || | ||||||| | | | |||| Sbjct 2377 TCTGTCTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGCTTGACC 2436 Query 79828 CTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCT 79887 ||| || | || || || || | ||| ||||| || ||||| ||||| Sbjct 2437 CTCCCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCC 2496 Query 79888 AATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTC 79947 | || || || |||| |||||||||| ||||| ||| | ||| ||||| ||| Sbjct 2497 AGCCCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTCTTC 2556 Query 79948 ATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTT 80006 || || || ||||| ||||| | | || ||| || ||||||| ||| |||||||| || Sbjct 2557 ATGAACAGGTCAGGGATCCACATGCCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTT 2615 Query 80007 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066 ||| || ||||| || || || ||||| | | | |||| | ||||| || || | ||| Sbjct 2616 TCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTA 2675 Query 80067 TATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 80126 ||||| | | || |||| ||||| || ||||| || | || | || || || || Sbjct 2676 CATGGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTGCCGTATTGTT 2735 Query 80127 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 80186 |||||||||| ||| || | | || ||||| | || ||||| || | || ||||| Sbjct 2736 GTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCT 2795 Query 80187 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246 || | | | || || | | | ||| || || || || || ||||| | Sbjct 2796 CCCCGTTGATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAG 2855 Query 80247 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAG 80306 |||||| | || || || || |||||||| || ||||| || || ||||| || | Sbjct 2856 GGCGCATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAA 2915 Query 80307 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 80366 || ||||| |||| || | | | | ||||| || || || | |||||||| ||||| Sbjct 2916 GAAGCAGCTGGACAGCTGTGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTG 2975 Query 80367 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 80426 || ||||| || || ||||| || || || ||||| || ||| || ||||| || Sbjct 2976 GGTGAACCACTTCTCCGACAGCAGGTTATAAGTCTCGATGACTGCGTCAATATCATTTTC 3035 Query 80427 ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATT 80486 ||| || || || | || ||||| | ||||||||| || | || | | ||| || Sbjct 3036 ATGGATCCCAACAGACACTCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTT 3095 Query 80487 TATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 80546 ||| ||||||| ||| || |||| ||| || || ||||| ||||||| || || || Sbjct 3096 TATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATC 3155 Query 80547 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT 80606 || ||| |||| || |||||||||| || |||||| | | | | ||| | Sbjct 3156 TCTGTCGAAAATTATGGCCGAGTTGAGGCGGTC------TTTGTTCTCAAGAACGATGTT 3209 Query 80607 GA-----TACTTGAA-ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAA 80660 || | |||| | || || ||||| || | | |||| || || | |||||| | Sbjct 3210 GAGTGTCTGCTTGGAGATCATGGGAGAGTGCTGTCTATTTAATGGGTTGATGTAGTTGTA 3269 Query 80661 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGC 80720 | ||||||||||| ||||| || | || || || || ||||| || || || || || Sbjct 3270 CAGGTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTGGAGACAGC 3329 Query 80721 TATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTC 80780 || | || || | ||||| || || || |||| || || |||||| | || || Sbjct 3330 GATCCGCGCAGCGAGGATGGCGTAGTCGGGGTGTTTAGTCGTGAGAGTGGCGGTGATCTC 3389 Query 80781 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 80840 || ||||| ||||| | || || || || || ||| | || | || ||||| ||||| Sbjct 3390 TGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCACTGTACAAACCCTGGATCACCTT 3449 Query 80841 CATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAAT 80900 ||| | || | ||||| | |||| ||| | || || || | || || Sbjct 3450 CATCGTAATCTGGGCCGGATCCACGAAGTCAGAGTTAAGTCCGTAGCACAGCTTCTGGAT 3509 Query 80901 ACGAGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCAT 80944 |||||| ||||||||||| ||||||||| |||| | ||||| Sbjct 3510 ACGAGAGGTGATTTTATCGAACATGACACGCTCCTGGCGTCCAT 3553 >seq51583 Length=2687 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || || ||||| ||||| | ||| | Sbjct 842 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGGCCTCTCTTCT 901 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || ||||| ||||| || ||||| ||||||||||| || || || || |||| Sbjct 902 TCAGCCAGAAGATGGAGGCAAAGGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 961 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 962 CCACCACGCGCTCTCC 977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716790126956520