Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq137229 502 3e-137 seq51583 93.3 6e-14 >seq137229 Length=11157 Score = 502 bits (556), Expect = 3e-137 Identities = 1298/1967 (66%), Gaps = 35/1967 (2%) Strand=Plus/Plus Query 71080 TTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139 || || ||||| || |||| | | |||||| || || || | || ||||||||||| Sbjct 1603 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTG 1662 Query 71140 ACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCC 71199 || | ||||| |||||||| | || || || ||||| || || ||||| || ||||| Sbjct 1663 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCG 1722 Query 71200 ACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 71259 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 1723 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 1782 Query 71260 AGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAG-AGATTCCCAATTCCAA 71316 ||||| || || | || ||| | || || || || || || || |||| | ||||| Sbjct 1783 AGACTGTTCCTCACGCC--GTGCTTGGCGATCTTCTCCTTCAGCAGTTTCC--AGTCCAA 1838 Query 71317 A-GATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA 71375 | || | || ||||| || || || || Sbjct 1839 CCGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGA 1898 Query 71376 TCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGC 71435 ||| | || || ||||| || || | |||| || || |||||||| | || Sbjct 1899 GCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGAATGCAGCTCGCCTCCAGAGC 1958 Query 71436 TCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAA 71495 | || |||||||| || || |||| | || || || ||||| ||||| ||||| Sbjct 1959 GGCGTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTTTCAAA 2018 Query 71496 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCT 71555 ||| ||| | ||| || || || ||||| || ||||| || ||||| || || || || Sbjct 2019 TGGGTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATTGGCCT 2078 Query 71556 GTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 71615 ||| | ||| || || | || ||||| || | |||||| | || | || || || || Sbjct 2079 GTGGCGCTTGTTGGACTTCTCTGCTTCAGGCACAGGATAGAAGTTTACTTCAATGATCTT 2138 Query 71616 ATTGAGATTTCTGACTATTACTTTGACCAC--ATCCTTTAGTTTGAGAAAATCAAA--TC 71671 || | || |||| ||||||||| ||| || || ||||| ||| ||||| || Sbjct 2139 GTTCAAGTTCTTGACGATTACTTTGGTCACGGATGCT--AGTTTTTCAAAGTCAAACGTC 2196 Query 71672 TCC-CATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCA 71730 | | || | || ||| ||| | || | || |||||||| || ||||||||||| Sbjct 2197 TGCTCAGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCG 2256 Query 71731 T--TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 71788 | | || || |||| | |||||| ||||| || || || |||||||||| || | Sbjct 2257 TCGTGGCT--GGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCA 2314 Query 71789 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAG 71848 ||| || || || ||||| ||| || || || || || || || | || ||||||| Sbjct 2315 GATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAG 2374 Query 71849 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT 71908 |||| |||| || || ||||| || | ||| || | ||||||| | | | |||| Sbjct 2375 TTTCTGTCTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGCTTGA 2434 Query 71909 ATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-G 71967 ||| || | || || || || | ||| ||||| || ||||| ||| | | Sbjct 2435 CCCTCCCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCA-GCACTCG 2493 Query 71968 TCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGT 72027 || | || || || || || |||||||||| ||||| ||| | | | ||||| Sbjct 2494 TCCAGCCCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTC 2553 Query 72028 TTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTC 72086 ||||| || || ||||| ||||| | | || ||| || ||||||| ||| |||||||| Sbjct 2554 TTCATGAACAGGTCAGGGATCCACATGCCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTC 2612 Query 72087 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 72146 ||||| || ||||| || || || ||||| | | | |||| | ||||| || || | Sbjct 2613 CTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAG 2672 Query 72147 GTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 72206 ||| ||||| | | || || | ||||| || ||||| || | || | || || || Sbjct 2673 GTACATGGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTGCCGTATT 2732 Query 72207 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 72266 || |||||||||| ||| || | | || ||||| || ||||| || | || || Sbjct 2733 GTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTA 2792 Query 72267 GCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326 ||| || | | | || ||| | | | ||| || || || || || ||||| Sbjct 2793 GCTCCCCGTTGATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGAT 2852 Query 72327 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 72386 | |||||| | || || || || |||||||| || || || || || ||||| || Sbjct 2853 GAGGGCGCATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAG 2912 Query 72387 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 72446 | || ||||| |||| || | | | | ||||| || || || | |||||||| || Sbjct 2913 CAAGAAGCAGCTGGACAGCTGTGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGC 2972 Query 72447 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCA 72506 ||| || ||||| || || ||||| || || || ||||| || ||| || ||||| Sbjct 2973 GTGGGTGAACCACTTCTCCGACAGCAGGTTATAAGTCTCGATGACTGCGTCAATATCATT 3032 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566 || ||| || || || | || ||||| | ||| ||||| || | || | | ||| Sbjct 3033 TTCATGGATCCCAACAGACACTCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCC 3092 Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626 ||||| ||||||| |||||| |||| ||| || || ||||| ||||||| || || Sbjct 3093 GTTTATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAA 3152 Query 72627 GTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCAT 72686 |||| ||| |||| || |||| ||||| || |||||| | | | | || Sbjct 3153 ATCTCTGTCGAAAATTATGGCCGAGTTGAGGCGGTC------TTTGTTCTCAAGAACGAT 3206 Query 72687 GGTGA-----TACTTGAA-ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTT 72740 | ||| | |||| | || || ||||| || | | |||| || || | ||||| Sbjct 3207 GTTGAGTGTCTGCTTGGAGATCATGGGAGAGTGCTGTCTATTTAATGGGTTGATGTAGTT 3266 Query 72741 GAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATAC 72800 | | | ||||||||||| ||||| || | || || || || ||||| || || || || Sbjct 3267 GTACAGGTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTGGAGAC 3326 Query 72801 GGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTAT 72860 || || | || || || ||||| || || || |||| || || |||||| | || Sbjct 3327 AGCGATCCGCGCAGCGAGGATGGCGTAGTCGGGGTGTTTAGTCGTGAGAGTGGCGGTGAT 3386 Query 72861 TTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 72920 ||||| ||||| ||||| | || || || || || ||| | || | || ||||| || Sbjct 3387 CTCTGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCACTGTACAAACCCTGGATCAC 3446 Query 72921 CTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT 72980 |||||| | || | ||||| | |||| ||| | || || || | || Sbjct 3447 CTTCATCGTAATCTGGGCCGGATCCACGAAGTCAGAGTTAAGTCCGTAGCACAGCTTCTG 3506 Query 72981 AATACGAGACGTGATTTTATCAAACATAACATTTTCCCGGCATCCAT 73027 |||||||| ||||||||||| ||||| ||| ||| ||| ||||| Sbjct 3507 GATACGAGAGGTGATTTTATCGAACATGACACGCTCCTGGCGTCCAT 3553 >seq51583 Length=2687 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||||| || || || || ||||| ||||| | ||| | Sbjct 842 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGGCCTCTCTTCT 901 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || ||||| || ||||| ||||||||||| || || || || |||| Sbjct 902 TCAGCCAGAAGATGGAGGCAAAGGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 961 Query 42207 C 42207 | Sbjct 962 C 962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669757550896680