Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 502 3e-137
seq51583 93.3 6e-14
>seq137229
Length=11157
Score = 502 bits (556), Expect = 3e-137
Identities = 1298/1967 (66%), Gaps = 35/1967 (2%)
Strand=Plus/Plus
Query 71080 TTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139
|| || ||||| || |||| | | |||||| || || || | || |||||||||||
Sbjct 1603 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTG 1662
Query 71140 ACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCC 71199
|| | ||||| |||||||| | || || || ||||| || || ||||| || |||||
Sbjct 1663 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCG 1722
Query 71200 ACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 71259
| ||||| || || |||| || || || || || || || ||||| || |||| ||
Sbjct 1723 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 1782
Query 71260 AGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAG-AGATTCCCAATTCCAA 71316
||||| || || | || ||| | || || || || || || || |||| | |||||
Sbjct 1783 AGACTGTTCCTCACGCC--GTGCTTGGCGATCTTCTCCTTCAGCAGTTTCC--AGTCCAA 1838
Query 71317 A-GATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA 71375
| || | || ||||| || || || ||
Sbjct 1839 CCGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGA 1898
Query 71376 TCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGC 71435
||| | || || ||||| || || | |||| || || |||||||| | ||
Sbjct 1899 GCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGAATGCAGCTCGCCTCCAGAGC 1958
Query 71436 TCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAA 71495
| || |||||||| || || |||| | || || || ||||| ||||| |||||
Sbjct 1959 GGCGTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTTTCAAA 2018
Query 71496 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCT 71555
||| ||| | ||| || || || ||||| || ||||| || ||||| || || || ||
Sbjct 2019 TGGGTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATTGGCCT 2078
Query 71556 GTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 71615
||| | ||| || || | || ||||| || | |||||| | || | || || || ||
Sbjct 2079 GTGGCGCTTGTTGGACTTCTCTGCTTCAGGCACAGGATAGAAGTTTACTTCAATGATCTT 2138
Query 71616 ATTGAGATTTCTGACTATTACTTTGACCAC--ATCCTTTAGTTTGAGAAAATCAAA--TC 71671
|| | || |||| ||||||||| ||| || || ||||| ||| ||||| ||
Sbjct 2139 GTTCAAGTTCTTGACGATTACTTTGGTCACGGATGCT--AGTTTTTCAAAGTCAAACGTC 2196
Query 71672 TCC-CATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCA 71730
| | || | || ||| ||| | || | || |||||||| || |||||||||||
Sbjct 2197 TGCTCAGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCG 2256
Query 71731 T--TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 71788
| | || || |||| | |||||| ||||| || || || |||||||||| || |
Sbjct 2257 TCGTGGCT--GGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCA 2314
Query 71789 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAG 71848
||| || || || ||||| ||| || || || || || || || | || |||||||
Sbjct 2315 GATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAG 2374
Query 71849 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT 71908
|||| |||| || || ||||| || | ||| || | ||||||| | | | ||||
Sbjct 2375 TTTCTGTCTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGCTTGA 2434
Query 71909 ATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-G 71967
||| || | || || || || | ||| ||||| || ||||| ||| | |
Sbjct 2435 CCCTCCCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCA-GCACTCG 2493
Query 71968 TCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGT 72027
|| | || || || || || |||||||||| ||||| ||| | | | |||||
Sbjct 2494 TCCAGCCCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTC 2553
Query 72028 TTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTC 72086
||||| || || ||||| ||||| | | || ||| || ||||||| ||| ||||||||
Sbjct 2554 TTCATGAACAGGTCAGGGATCCACATGCCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTC 2612
Query 72087 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 72146
||||| || ||||| || || || ||||| | | | |||| | ||||| || || |
Sbjct 2613 CTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAG 2672
Query 72147 GTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 72206
||| ||||| | | || || | ||||| || ||||| || | || | || || ||
Sbjct 2673 GTACATGGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTGCCGTATT 2732
Query 72207 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 72266
|| |||||||||| ||| || | | || ||||| || ||||| || | || ||
Sbjct 2733 GTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTA 2792
Query 72267 GCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326
||| || | | | || ||| | | | ||| || || || || || |||||
Sbjct 2793 GCTCCCCGTTGATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGAT 2852
Query 72327 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 72386
| |||||| | || || || || |||||||| || || || || || ||||| ||
Sbjct 2853 GAGGGCGCATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAG 2912
Query 72387 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 72446
| || ||||| |||| || | | | | ||||| || || || | |||||||| ||
Sbjct 2913 CAAGAAGCAGCTGGACAGCTGTGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGC 2972
Query 72447 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCA 72506
||| || ||||| || || ||||| || || || ||||| || ||| || |||||
Sbjct 2973 GTGGGTGAACCACTTCTCCGACAGCAGGTTATAAGTCTCGATGACTGCGTCAATATCATT 3032
Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566
|| ||| || || || | || ||||| | ||| ||||| || | || | | |||
Sbjct 3033 TTCATGGATCCCAACAGACACTCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCC 3092
Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626
||||| ||||||| |||||| |||| ||| || || ||||| ||||||| || ||
Sbjct 3093 GTTTATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAA 3152
Query 72627 GTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCAT 72686
|||| ||| |||| || |||| ||||| || |||||| | | | | ||
Sbjct 3153 ATCTCTGTCGAAAATTATGGCCGAGTTGAGGCGGTC------TTTGTTCTCAAGAACGAT 3206
Query 72687 GGTGA-----TACTTGAA-ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTT 72740
| ||| | |||| | || || ||||| || | | |||| || || | |||||
Sbjct 3207 GTTGAGTGTCTGCTTGGAGATCATGGGAGAGTGCTGTCTATTTAATGGGTTGATGTAGTT 3266
Query 72741 GAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATAC 72800
| | | ||||||||||| ||||| || | || || || || ||||| || || || ||
Sbjct 3267 GTACAGGTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTGGAGAC 3326
Query 72801 GGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTAT 72860
|| || | || || || ||||| || || || |||| || || |||||| | ||
Sbjct 3327 AGCGATCCGCGCAGCGAGGATGGCGTAGTCGGGGTGTTTAGTCGTGAGAGTGGCGGTGAT 3386
Query 72861 TTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 72920
||||| ||||| ||||| | || || || || || ||| | || | || ||||| ||
Sbjct 3387 CTCTGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCACTGTACAAACCCTGGATCAC 3446
Query 72921 CTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT 72980
|||||| | || | ||||| | |||| ||| | || || || | ||
Sbjct 3447 CTTCATCGTAATCTGGGCCGGATCCACGAAGTCAGAGTTAAGTCCGTAGCACAGCTTCTG 3506
Query 72981 AATACGAGACGTGATTTTATCAAACATAACATTTTCCCGGCATCCAT 73027
|||||||| ||||||||||| ||||| ||| ||| ||| |||||
Sbjct 3507 GATACGAGAGGTGATTTTATCGAACATGACACGCTCCTGGCGTCCAT 3553
>seq51583
Length=2687
Score = 93.3 bits (102), Expect = 6e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| ||||| || || | |||||||| || || || || ||||| ||||| | ||| |
Sbjct 842 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGGCCTCTCTTCT 901
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| || || || ||||| || ||||| ||||||||||| || || || || ||||
Sbjct 902 TCAGCCAGAAGATGGAGGCAAAGGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 961
Query 42207 C 42207
|
Sbjct 962 C 962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 669757550896680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |