Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq137696 149 9e-31 seq49656 136 6e-27 seq90121 109 8e-19 seq127709 87.8 3e-12 >seq137696 Length=6824 Score = 149 bits (164), Expect = 9e-31 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||||||| || |||||| || ||||| ||||| || |||||||| |||||||| Sbjct 4960 TTGACGATGTTGAAGCCCACGCTGCCTCCGAATGTGCTCGGCTTCCAGTACTCCGGGGAG 4901 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| ||| |||| | ||| |||||||| | || ||||||| ||| | ||| || Sbjct 4900 CAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATGGTC 4841 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || ||||| ||||| | | |||||| |||||||| | || | ||| | ||||||| Sbjct 4840 TCCCCAAAGATTGCGTTAGACCTGGGCTTCTCCACCAACAGACCCGGGTAGAGCTCCACA 4781 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || |||| || |||||| | || |||| || || ||||| || ||||||| Sbjct 4780 GCGTCGACGTGTCCGTAGAACTCCTCGAGTATTGCGGCCATTTCTTTCTCTCCTG 4726 Score = 100 bits (110), Expect = 4e-16 Identities = 166/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 9628 CGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCG 9687 || |||||||| || || |||||| ||| || || || | |||| ||||| Sbjct 2966 CGTGTGGTCTGGAAGAGCCTTTCGTCGTCCCAGTCCGGGTGGACCTCCTTCAACACATCA 2907 Query 9688 CACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGG 9747 ||||||| |||||| || | |||||||| || ||||||||||| ||||| || || ||| Sbjct 2906 CACACTCGGTTGTGCTCTCGTAGCCAGATGGTGGCGTACATCATCAGACCGGGGACAAGG 2847 Query 9748 CCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATC 9807 ||||| ||||| || || ||||| | || | ||| || || | ||||| ||| | Sbjct 2846 CCAAACGCCTCGTGGCCCACAGCGAAGCGGTGAGATTCAGGAACGTGAGGAGGGTAGTGC 2787 Query 9808 ATGT--GCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863 |||| || || || ||||| || | || || |||| || || || || | ||| Sbjct 2786 ATGTCAGCGCC--CACTTCTTTTACTGTTGGCGGGTACACCTCTCCATCCATGACCTG 2731 Score = 86.0 bits (94), Expect = 9e-12 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| || ||||| || || || || || ||||| || || | | |||||||| Sbjct 3497 CTTACCCGTCCAGCAATCTGATTGGTAAATGATTCCACAAGGTTGCCGATGCCGTGCTCG 3438 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441 ||| || ||| ||||| | || || | | ||| || | | | | ||||| | Sbjct 3437 GTGACTACGGAGGTGTTGAAGACAAACTCTTTATAGCTGTAATCTTTCTCCTCAATGTGG 3378 Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501 || || ||||| |||| |||||||| ||||| |||| |||||||| || ||| Sbjct 3377 AAGCTGTCAGGCATCAGAGGGTGCCAGTGGTACAAGGTGTTGAACTCGGATGCAATGCGA 3318 Query 9502 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 || ||||||||||| || | |||||||| ||||| | |||| | || |||| Sbjct 3317 TTCTGGTACTGGAAGCGTTG-GTTGAAGAGCAGCTCGGGATCAAACTTGAGCTTGAAGTT 3259 Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584 |||||||| || ||||| || || Sbjct 3258 ATAGCCGCTCAGGTGCTGCACGTA 3235 >seq49656 Length=2153 Score = 136 bits (150), Expect = 6e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||||||| | || ||| ||||| || ||||||||||| |||||||| | |||||| Sbjct 328 TTGACGATATCGAAACCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCGGGGGAG 269 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| ||| |||| |||||||| ||||| || ||||| |||| ||| | || ||| Sbjct 268 CAGATGGGGTTTCCCATCAGGCCTTTCAGGGAGAAGGGAGCGCCCATCTCCACCATACTC 209 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 ||||| || | | | ||| ||| ||| |||| || || |||| ||| ||||||| | Sbjct 208 TCACCAAATAGCTTGGTAGGATGGGTCTTCTCCAGCATGAGGCCGGGGTAGAACTCCAGA 149 Query 8921 GCCTCGATGTCTCCGTAAAG 8940 || || ||||| || || || Sbjct 148 GCATCTATGTCACCATAGAG 129 >seq90121 Length=4062 Score = 109 bits (120), Expect = 8e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | || ||||| |||||||| || || || ||||| ||| |||||| Sbjct 1280 TCACCAATGACGACGAGTCTGGTGGTCTGGAAGAGCTGCTCGTCGTCCCAGGTCGGATGT 1221 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| ||||| || ||||| ||||||||||| ||||| ||||| | || ||||||| Sbjct 1220 TCTGCCTTCAGGACGTCGCAGACTCTGTTGTGCTCCCTCAGCCATAGGGTGGCGTACAAG 1161 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 |||| || |||| | ||| || |||| ||||| | ||||| ||| | | | ||| Sbjct 1160 GTGAGGCCCGGCAGGATGCCGAACACCTCCTGACCAATGGCCAGCCGCTTTTCTGGGGGG 1101 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATC 9824 || | |||||| | ||||||||| |||| || Sbjct 1100 ACGTTTTCAGGATACACCATGTGCACAGGGACCTC 1066 >seq127709 Length=23497 Score = 87.8 bits (96), Expect = 3e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || || | || || ||||||||||| ||||||||| |||| || || || || Sbjct 19427 CAAAGCCGACTTTGCCCCCAAAGGTGCTGGGCTTCCAGTAAACCGGAGAACAAATAGGGT 19486 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| ||||||||| ||||| || || || |||| ||| | |||||||| || || | Sbjct 19487 TTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTCTCTCCAAAAA 19546 Query 8871 TGG 8873 ||| Sbjct 19547 TGG 19549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707066186563920