Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq126665 89.7 8e-14 seq9301 84.2 3e-12 seq127032 80.6 4e-11 >seq126665 Length=1171 Score = 89.7 bits (98), Expect = 8e-14 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||||||||| ||||||||||| |||||||| || |||||||| || || Sbjct 109 CTCCGTGACAACATCCAAGGCATCACCAAGCCCGCTATCCGCCGCCTGGCTCGCCGCGGC 50 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||| ||||| |||| || || |||| || |||| Sbjct 49 GGAGTGAAGCGCATCTCCGGTCTGATCTACGAGGAGA 13 >seq9301 Length=263 Score = 84.2 bits (92), Expect = 3e-12 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||||| |||| || || |||| || |||| || | || ||||| |||| Sbjct 3 GGAGTGAAGCGCATCTCCGGTCTGATCTACGAGGAGACCCGCGGCGTGCTGAAGGTCTTT 62 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| |||||| || || |||||||||||||| | ||||| || Sbjct 63 CTGGAGAACGTGATCCGTGATGCCGTCACGTACACCGAGCACGCTAAGAGGAAGACGGTG 122 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | || || || |||| | || ||||| Sbjct 123 ACCGCCATGGACGTGGTTTACGCCCTGAAGAGGCAGGGCCG 163 >seq127032 Length=892 Score = 80.6 bits (88), Expect = 4e-11 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| |||||||| || |||||||| || | Sbjct 109 CTCCGTGACAACATCCAGGGCATCACCAAGCCCGCTATCCGCCGCCTGGCTCGCCGCTGC 50 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||| ||||| |||| || || |||| || |||| Sbjct 49 GGAGTGAAGCGCATCTCCGGTCTGATCTACGAGGAGA 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78924620037249