Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 511 6e-140
seq51583 105 8e-18
>seq137229
Length=11157
Score = 511 bits (566), Expect = 6e-140
Identities = 1296/1964 (66%), Gaps = 29/1964 (1%)
Strand=Plus/Plus
Query 62274 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62333
||||| ||||| || |||| | | |||||| || || || | || ||||| |||||
Sbjct 1603 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTG 1662
Query 62334 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62393
|| | ||||| |||||||| | || || || ||||| || || ||||| || |||||
Sbjct 1663 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCG 1722
Query 62394 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62453
| ||||| || || |||| || || || || || || || ||||| || |||| ||
Sbjct 1723 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 1782
Query 62454 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 62513
| ||| || || | |||| | ||| || || || || ||| ||| | | | |
Sbjct 1783 AGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTTCCAGTCCAACCGG 1842
Query 62514 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 62571
|| | || | | | || || || || || ||| || || |
Sbjct 1843 TCGGTGGG--CGTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGC 1900
Query 62572 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 62631
|| | || || ||||| || || || | || || || |||||||| | ||
Sbjct 1901 CTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGAATGCAGCTCGCCTCCAGAGCGG 1960
Query 62632 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 62691
|||| |||||||| || ||||||| | || || || ||||| |||| |||||||
Sbjct 1961 CGTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTTTCAAATG 2020
Query 62692 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62751
| ||| | ||| || || || || || || ||||| |||||||| || || || || |
Sbjct 2021 GGTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATTGGCCTGT 2080
Query 62752 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62811
| | ||| || || | || ||||| || | |||||| | || | || || || || |
Sbjct 2081 GGCGCTTGTTGGACTTCTCTGCTTCAGGCACAGGATAGAAGTTTACTTCAATGATCTTGT 2140
Query 62812 TGAGATTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTGAGAAAATCAAA--TC-G 62866
| | || |||| ||||||||| ||| || || ||||| ||| ||||| || |
Sbjct 2141 TCAAGTTCTTGACGATTACTTTGGTCACGGATGCT--AGTTTTTCAAAGTCAAACGTCTG 2198
Query 62867 CCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT- 62925
| || | || ||||||| | || | || |||||||| || ||||||||||| |
Sbjct 2199 CTCAGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTC 2258
Query 62926 -TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAA 62984
| || | |||| | || || ||||| || || || ||||||| || || | |
Sbjct 2259 GTGGCTGGTG--TATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGA 2316
Query 62985 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 63044
|| || || || ||||| ||| || || || || || || ||| |||| |||||||||
Sbjct 2317 TTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTT 2376
Query 63045 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTAT 63104
|| |||| || || ||||| || | ||| || | ||||||| | | | |||
Sbjct 2377 TCTGTCTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGCTTGACC 2436
Query 63105 CTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63164
|||| || | || || || || | ||| ||||| || ||||| | ||||
Sbjct 2437 CTCCCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCC 2496
Query 63165 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63224
| || || || || | |||||||||| ||||| ||| || ||| |||| |||
Sbjct 2497 AGCCCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTCTTC 2556
Query 63225 ATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63283
|| || || ||||| ||||| | | || ||| || ||||||| ||| || ||||| ||
Sbjct 2557 ATGAACAGGTCAGGGATCCACATGCCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTT 2615
Query 63284 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343
||| || ||||| || || || ||||| | | | |||| | ||||| || || | |||
Sbjct 2616 TCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTA 2675
Query 63344 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63403
||||| | | || || | ||||| || ||||| || | || | || || || ||
Sbjct 2676 CATGGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTGCCGTATTGTT 2735
Query 63404 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCT 63463
|||||||||| ||| || | | ||||| || | || ||||| || | || |||||
Sbjct 2736 GTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCT 2795
Query 63464 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523
|| | | | || || | | | ||| || || || || || ||||| |
Sbjct 2796 CCCCGTTGATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAG 2855
Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAG 63583
|||||| | || || ||||| ||||| || || ||||| || || ||||| || |
Sbjct 2856 GGCGCATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAA 2915
Query 63584 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63643
|| ||||| |||| || | | | | ||||| || || || | |||||||| |||||
Sbjct 2916 GAAGCAGCTGGACAGCTGTGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTG 2975
Query 63644 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63703
|| ||||| || || || || || || || ||||| || ||| ||| ||||| ||
Sbjct 2976 GGTGAACCACTTCTCCGACAGCAGGTTATAAGTCTCGATGACTGCGTCAATATCATTTTC 3035
Query 63704 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63763
||| || || || | || ||||| | ||||||||| || | || | | ||| |||
Sbjct 3036 ATGGATCCCAACAGACACTCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTT 3095
Query 63764 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63823
||| ||||||| |||||| |||| ||| || || ||||| ||||||| || || ||
Sbjct 3096 TATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATC 3155
Query 63824 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGT 63883
|| ||| |||| || |||||||||| || |||||| | | | | ||| |
Sbjct 3156 TCTGTCGAAAATTATGGCCGAGTTGAGGCGGTC------TTTGTTCTCAAGAACGATGTT 3209
Query 63884 GA-----TACTTGAA-ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAA 63937
|| | |||| | || || ||||| || | | |||| || || | |||||| |
Sbjct 3210 GAGTGTCTGCTTGGAGATCATGGGAGAGTGCTGTCTATTTAATGGGTTGATGTAGTTGTA 3269
Query 63938 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGC 63997
| ||||||||||| ||||| || | || || || || ||||| || || || || ||
Sbjct 3270 CAGGTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTGGAGACAGC 3329
Query 63998 TATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTC 64057
|| | || || || ||||| || || || |||| || || |||||| | || ||
Sbjct 3330 GATCCGCGCAGCGAGGATGGCGTAGTCGGGGTGTTTAGTCGTGAGAGTGGCGGTGATCTC 3389
Query 64058 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTT 64117
|| ||||| ||||| | || || || || || ||| | || | || || || |||||
Sbjct 3390 TGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCACTGTACAAACCCTGGATCACCTT 3449
Query 64118 CATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCTAAT 64177
||| | || | ||||| | || | ||| | || || || | || ||
Sbjct 3450 CATCGTAATCTGGGCCGGATCCACGAAGTCAGAGTTAAGTCCGTAGCACAGCTTCTGGAT 3509
Query 64178 ACGAGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCAT 64221
|||||| ||||||||||| ||||||||| |||| | |||||
Sbjct 3510 ACGAGAGGTGATTTTATCGAACATGACACGCTCCTGGCGTCCAT 3553
>seq51583
Length=2687
Score = 105 bits (116), Expect = 8e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| || || || |||||||| || || || || ||||| ||||| | ||| |
Sbjct 842 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGGCCTCTCTTCT 901
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| || ||||| || || || ||||| ||||||||||| || || ||||| ||||
Sbjct 902 TCAGCCAGAAGATGGAGGCAAAGGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 961
Query 33446 C 33446
|
Sbjct 962 C 962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621664761959880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |