Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq137229 176 1e-38 >seq137229 Length=11157 Score = 176 bits (194), Expect = 1e-38 Identities = 566/871 (65%), Gaps = 22/871 (3%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || |||||||| ||| | ||||| || || |||| |||||| ||| |||| Sbjct 3080 GAGCGGCCGCAGCACATGCTCATGCGAGTGTCTGTTGGGATCCATGAAAATGATATTGAC 3021 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTC-GTGTATTCACGCACGCCACGCCAAC 363566 || | || || || ||||| || || | ||| ||||| |||||| | || || Sbjct 3020 GCAGTCATCGAGACTTATAACCTGCTGTCGGAGAAGTGG-TTCACCCACGCCTCTCCTAC 2962 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | ||| || ||||| || |||||| |||| ||||| | || ||||| Sbjct 2961 GCTCTTCAACGCAGGAACCAATAGGCCACAGCTGTCCAGCTGCTTCTTGCTCGCCATGAA 2902 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 ||||| |||||| || |||| ||||| | ||| | || || || || |||||| Sbjct 2901 AGACGACAGCATCGAAGGCATCTACGACACCTTGAAGCAATGCGCCCTCATCTCCAAGTC 2842 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGG 363746 || || || || ||||| | || | | | || | || |||||| || Sbjct 2841 AGCTGGAGGCATCGGTGTGGCCGTCAGCTGCATCAGATCAACGGGGAGCTACATTGCTGG 2782 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 ||| || |||| || ||||| || |||||||| | || | ||||||| || | Sbjct 2781 CACCAACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTTTACAACAATACGGCACG 2722 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 || || ||||||||||| ||| | ||||| || || ||||| || ||||| Sbjct 2721 TTATGTGGACCAGGGTGGGAACAAGAGACCCGGGGCCTTCGCCATGTACCTAGAGCCCTG 2662 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 || ||| | ||||| || || ||||| ||| ||||||||||| ||||| | | Sbjct 2661 GCACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGAG 2602 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG- 363985 || | || || ||||| | | ||| | |||||| || |||||| | || |||| Sbjct 2601 AGCCAGAGACCTTTTCTACGGCATGTGGATCCCTGACCTGTTCATGAAGAGAGTAGAGGG 2542 Query 363986 CAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGG 364045 || |||| | |||| || | || || |||| || || || || ||| |||| Sbjct 2541 CAACCAAGACT-GGTCTCTGATGTGTCCCAACGAGTGCCCCGGGCTGGACGAGTGCTGGG 2483 Query 364046 GTGACGACTATGTT--GCTCTATAC-------GAAAAGTATGAATCGGAGGGAAAGGCTC 364096 | || || | || |||||| || || ||| | | |||||| | || Sbjct 2482 GGGAGGAGTTTGAAAAGCTCTACACCTCCTATGAGAAGGACG----GGAGGGTCAAGCGT 2427 Query 364097 GTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAG 364156 || | || || || || | ||| |||||| || || || |||| || || | Sbjct 2426 GTG-GTGAAG----GCTCAACAGGTGTGGCATGCCATTATTGAGTCCCAGACAGAAACTG 2372 Query 364157 GAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTG 364216 | || || || ||| |||||||||| | |||||||| ||| |||||| ||| | || | Sbjct 2371 GTACGCCATACATGCTGTACAAAGACGCCTGCAACCGGAAGAGCAACCACCAGAATCTGG 2312 Query 364217 GTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276 | || || || |||||||| || || || ||| ||||||||||| | ||||||| Sbjct 2311 GCACCATCAAGTCCAGCAACCTCTGCACAGAAATTGTTGAATACACCAGCCACGACGAGG 2252 Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 ||||| || || || || || |||||||| Sbjct 2251 TAGCCGTCTGCAATCTGGCCTCAATCGCGCT 2221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1300603355689926