Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 226 3e-54
seq55784 120 3e-22
>seq137229
Length=11157
Score = 226 bits (250), Expect = 3e-54
Identities = 970/1506 (64%), Gaps = 34/1506 (2%)
Strand=Plus/Plus
Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115
||||||||| ||||||||| || | | || | || || | ||| ||| |||
Sbjct 1658 GATTGACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGG 1717
Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175
|||| | |||||||| ||||||||||| || ||||| | || |||||||| ||||
Sbjct 1718 GTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCA 1777
Query 145176 CCA--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATC 145233
|| | | || || | || ||||||||| ||| | ||||| ||| ||| ||
Sbjct 1778 GCAGCAGACTG--TTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTTCCAGTC 1835
Query 145234 CCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG 145293
| | | || ||| || ||||||||||||||||||| ||||||| |||| ||||
Sbjct 1836 CAACCGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGG 1895
Query 145294 GCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAACTCGCCTCC 145351
||||| | | ||| | || || | ||| || ||| |||||||||
Sbjct 1896 AGAGCCTTCGTACGTCTCGTA--GGGGCCGAGCTCAGCGGCCAGAATGCAGCTCGCCTCC 1953
Query 145352 AGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTC 145411
|||||| || | ||||| ||||| || || |||| |||||| |||||| |||
Sbjct 1954 AGAGCGGCGTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTT 2013
Query 145412 TCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATG 145471
|| | || |||| || | || ||||| || | || |||| || | || ||
Sbjct 2014 TCAAATGGGTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATT 2073
Query 145472 GGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG-ATAGGATA-TCGATTACGGTCGA 145529
|||| || | ||||| | | ||| | | | | |||||| | |||| || |
Sbjct 2074 GGCCTGTGGCGCTTGTTGGAC-TTCTCTGCTTCAGGCACAGGATAGAAGTTTAC-TTCAA 2131
Query 145530 TAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGC-AACTTTTCAAAGTCA 145588
| || || |||||||| || | ||| || || | | | || | ||||||||||||
Sbjct 2132 TGATCTTGTTCAAGTTCTTGACGATTACTTTGGTCACG-GATGCTAGTTTTTCAAAGTCA 2190
Query 145589 AACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACT 145648
||| | || ||| | || | | |||| ||||| || |||| ||| || ||
Sbjct 2191 AAC---GTCTGCTCAGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACG 2247
Query 145649 GCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATG 145708
|| ||| ||| | | |||||| || || || | ||| | ||||| | ||||||
Sbjct 2248 GCTACCTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATG 2307
Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768
|| |||||||| || || || || |||| |||||| ||||| ||||| |||||||| ||
Sbjct 2308 GTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGC 2367
Query 145769 CCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGC 145828
||||| || ||| | ||| | || | | || | || || ||||
Sbjct 2368 GTACCAGTTTCTGTCTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACA 2427
Query 145829 TGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAG 145888
||| | | || || | || || ||||||||| |||||| | || ||
Sbjct 2428 CGCTTGACCCTCCCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAG 2487
Query 145889 CAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTG 145948
|| ||| ||| ||||| |||| ||||||||||||||| ||||| | |||| | |
Sbjct 2488 CACTCGTCCAGCCCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCT 2547
Query 145949 ACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTTTGC 146006
|| | || ||| |||| || || | ||||| |||| | | ||| | || || |||
Sbjct 2548 ACTCTCTTCATGAACAGGTCAGGGATCCACATGCCGTAGAAAAGGTCTCTGGCTCTCTGC 2607
Query 146007 AATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACG 146066
||||| ||| |||| ||||| | || | | | | || |||||| |
Sbjct 2608 --TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGG 2665
Query 146067 GTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCACGTGACGTA 146123
| || | || | ||||| ||| || | || | || |||||||||||||| | ||||
Sbjct 2666 GCTCTAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTG 2725
Query 146124 CCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGT 146183
|| | ||||| | || | || |||||| ||| ||| ||| |||||| || |
Sbjct 2726 CCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGT-GCCA 2784
Query 146184 TTATTCTGGTGCCGCG-GGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGTAC 146242
| | | | || || || | | ||| || ||| |||| || || | ||
Sbjct 2785 GCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGAC 2844
Query 146243 TTGGATATAGCGGCGCAGT-CGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCGCTTCG 146301
||||| || |||||| | | | || || ||||||||||| || ||||| ||| |
Sbjct 2845 TTGGAGATGAGGGCGCATTGCTTCAAG-GTGTCGTAGATGCCTTCGATGCTGTCGTCTTT 2903
Query 146302 AATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGT 146361
||| |||||| ||||| | ||| ||| | | | || || || ||| | |||
Sbjct 2904 CATGGCGAGCAAGAAGCAGCTGGACAGCTGTGGCCTATTGGTTCCTGCGTTGAAGAGCGT 2963
Query 146362 CGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCTT 146420
|| ||||| || || || || || | || || ||| || ||||| | | |
Sbjct 2964 AGGAGAGGCGTGGGTGAACCACTTCTCCG-ACAGCAGGTTATAAGTCTCGATGACTGCGT 3022
Query 146421 GAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCG 146480
||| || | |||| || || | || || |||||||||||||| || |||||||| |
Sbjct 3023 CAATATCATTTTCATGGATCCCAACAGACACTCGCATGAGCATGTGCTGCGGCCGCTCGG 3082
Query 146481 CCACTTGATTGTCAATCTTTAACAAATAG--CCGTTCTCCAGGGTTTTGTATCCGAAAAA 146538
|||||| || ||||| |||| ||| ||| |||||| || ||| | || || ||
Sbjct 3083 CCACTTTGCCGTTTATCTTCAACAGGTAGGACCG--CTCCAGAGTCTTGAAGCCAAAGAA 3140
Query 146539 TTTGTA 146544
|||||
Sbjct 3141 GTTGTA 3146
>seq55784
Length=9571
Score = 120 bits (132), Expect = 3e-22
Identities = 87/101 (86%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727
|||| | ||||||||| | ||||| |||||| |||||||||| |||||||| ||||| |
Sbjct 2616 TGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 2675
Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768
| || ||||||||||| |||||||||||||||||||| |||
Sbjct 2676 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGT 2716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471041084949120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |