Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq137229 226 3e-54 seq55784 120 3e-22 >seq137229 Length=11157 Score = 226 bits (250), Expect = 3e-54 Identities = 970/1506 (64%), Gaps = 34/1506 (2%) Strand=Plus/Plus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 ||||||||| ||||||||| || | | || | || || | ||| ||| ||| Sbjct 1658 GATTGACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGG 1717 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 |||| | |||||||| ||||||||||| || ||||| | || |||||||| |||| Sbjct 1718 GTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCA 1777 Query 145176 CCA--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATC 145233 || | | || || | || ||||||||| ||| | ||||| ||| ||| || Sbjct 1778 GCAGCAGACTG--TTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTTCCAGTC 1835 Query 145234 CCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG 145293 | | | || ||| || ||||||||||||||||||| ||||||| |||| |||| Sbjct 1836 CAACCGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGG 1895 Query 145294 GCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAACTCGCCTCC 145351 ||||| | | ||| | || || | ||| || ||| ||||||||| Sbjct 1896 AGAGCCTTCGTACGTCTCGTA--GGGGCCGAGCTCAGCGGCCAGAATGCAGCTCGCCTCC 1953 Query 145352 AGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTC 145411 |||||| || | ||||| ||||| || || |||| |||||| |||||| ||| Sbjct 1954 AGAGCGGCGTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTT 2013 Query 145412 TCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATG 145471 || | || |||| || | || ||||| || | || |||| || | || || Sbjct 2014 TCAAATGGGTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATT 2073 Query 145472 GGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG-ATAGGATA-TCGATTACGGTCGA 145529 |||| || | ||||| | | ||| | | | | |||||| | |||| || | Sbjct 2074 GGCCTGTGGCGCTTGTTGGAC-TTCTCTGCTTCAGGCACAGGATAGAAGTTTAC-TTCAA 2131 Query 145530 TAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGC-AACTTTTCAAAGTCA 145588 | || || |||||||| || | ||| || || | | | || | |||||||||||| Sbjct 2132 TGATCTTGTTCAAGTTCTTGACGATTACTTTGGTCACG-GATGCTAGTTTTTCAAAGTCA 2190 Query 145589 AACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACT 145648 ||| | || ||| | || | | |||| ||||| || |||| ||| || || Sbjct 2191 AAC---GTCTGCTCAGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACG 2247 Query 145649 GCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATG 145708 || ||| ||| | | |||||| || || || | ||| | ||||| | |||||| Sbjct 2248 GCTACCTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATG 2307 Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768 || |||||||| || || || || |||| |||||| ||||| ||||| |||||||| || Sbjct 2308 GTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGC 2367 Query 145769 CCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGC 145828 ||||| || ||| | ||| | || | | || | || || |||| Sbjct 2368 GTACCAGTTTCTGTCTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACA 2427 Query 145829 TGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAG 145888 ||| | | || || | || || ||||||||| |||||| | || || Sbjct 2428 CGCTTGACCCTCCCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAG 2487 Query 145889 CAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTG 145948 || ||| ||| ||||| |||| ||||||||||||||| ||||| | |||| | | Sbjct 2488 CACTCGTCCAGCCCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCT 2547 Query 145949 ACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTTTGC 146006 || | || ||| |||| || || | ||||| |||| | | ||| | || || ||| Sbjct 2548 ACTCTCTTCATGAACAGGTCAGGGATCCACATGCCGTAGAAAAGGTCTCTGGCTCTCTGC 2607 Query 146007 AATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACG 146066 ||||| ||| |||| ||||| | || | | | | || |||||| | Sbjct 2608 --TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGG 2665 Query 146067 GTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCACGTGACGTA 146123 | || | || | ||||| ||| || | || | || |||||||||||||| | |||| Sbjct 2666 GCTCTAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTG 2725 Query 146124 CCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGT 146183 || | ||||| | || | || |||||| ||| ||| ||| |||||| || | Sbjct 2726 CCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGT-GCCA 2784 Query 146184 TTATTCTGGTGCCGCG-GGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGTAC 146242 | | | | || || || | | ||| || ||| |||| || || | || Sbjct 2785 GCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGAC 2844 Query 146243 TTGGATATAGCGGCGCAGT-CGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCGCTTCG 146301 ||||| || |||||| | | | || || ||||||||||| || ||||| ||| | Sbjct 2845 TTGGAGATGAGGGCGCATTGCTTCAAG-GTGTCGTAGATGCCTTCGATGCTGTCGTCTTT 2903 Query 146302 AATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGT 146361 ||| |||||| ||||| | ||| ||| | | | || || || ||| | ||| Sbjct 2904 CATGGCGAGCAAGAAGCAGCTGGACAGCTGTGGCCTATTGGTTCCTGCGTTGAAGAGCGT 2963 Query 146362 CGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCTT 146420 || ||||| || || || || || | || || ||| || ||||| | | | Sbjct 2964 AGGAGAGGCGTGGGTGAACCACTTCTCCG-ACAGCAGGTTATAAGTCTCGATGACTGCGT 3022 Query 146421 GAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCG 146480 ||| || | |||| || || | || || |||||||||||||| || |||||||| | Sbjct 3023 CAATATCATTTTCATGGATCCCAACAGACACTCGCATGAGCATGTGCTGCGGCCGCTCGG 3082 Query 146481 CCACTTGATTGTCAATCTTTAACAAATAG--CCGTTCTCCAGGGTTTTGTATCCGAAAAA 146538 |||||| || ||||| |||| ||| ||| |||||| || ||| | || || || Sbjct 3083 CCACTTTGCCGTTTATCTTCAACAGGTAGGACCG--CTCCAGAGTCTTGAAGCCAAAGAA 3140 Query 146539 TTTGTA 146544 ||||| Sbjct 3141 GTTGTA 3146 >seq55784 Length=9571 Score = 120 bits (132), Expect = 3e-22 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||||||||| | ||||| |||||| |||||||||| |||||||| ||||| | Sbjct 2616 TGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 2675 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768 | || ||||||||||| |||||||||||||||||||| ||| Sbjct 2676 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGT 2716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471041084949120