Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq137229 526 3e-144 >seq137229 Length=11157 Score = 526 bits (582), Expect = 3e-144 Identities = 1299/1964 (66%), Gaps = 29/1964 (1%) Strand=Plus/Plus Query 62129 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62188 ||||| ||||| || |||| | | |||||| || || || | || ||||| ||||| Sbjct 1603 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTG 1662 Query 62189 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62248 || | ||||| |||||||| | || || || ||||| || || ||||| || ||||| Sbjct 1663 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCG 1722 Query 62249 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62308 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 1723 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 1782 Query 62309 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 62368 | ||| || || | |||| | ||| || || || || ||| ||| | | | | Sbjct 1783 AGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTTCCAGTCCAACCGG 1842 Query 62369 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 62426 || | || | | | || || || || || ||| || || | Sbjct 1843 TCGGTGGG--CGTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGC 1900 Query 62427 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 62486 || | || || ||||| || || || | || || || |||||||| | || Sbjct 1901 CTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGAATGCAGCTCGCCTCCAGAGCGG 1960 Query 62487 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATG 62546 |||| |||||||| || ||||||| | || || || ||||| |||| ||||||| Sbjct 1961 CGTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTTTCAAATG 2020 Query 62547 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62606 | ||| | ||| || || || ||||| || ||||| |||||||| || || || || | Sbjct 2021 GGTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATTGGCCTGT 2080 Query 62607 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62666 | | ||| || || | || ||||| || | |||||| | || | || || || || | Sbjct 2081 GGCGCTTGTTGGACTTCTCTGCTTCAGGCACAGGATAGAAGTTTACTTCAATGATCTTGT 2140 Query 62667 TGAGATTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTGAGAAAATCAAA--TC-G 62721 | | || |||| ||||||||| ||| || || ||||| ||| ||||| || | Sbjct 2141 TCAAGTTCTTGACGATTACTTTGGTCACGGATGCT--AGTTTTTCAAAGTCAAACGTCTG 2198 Query 62722 CCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT- 62780 | || | || ||||||| | || | || |||||||| || ||||||||||| | Sbjct 2199 CTCAGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTC 2258 Query 62781 -TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 62839 | || | |||| | || || ||||| || || || |||||||||| || | | Sbjct 2259 GTGGCTGGTG--TATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGA 2316 Query 62840 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 62899 || || || || ||||| ||| || || || || || || ||| |||| ||||||||| Sbjct 2317 TTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTT 2376 Query 62900 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTAT 62959 || |||| || || ||||| || | ||| || | ||||||| | | | ||| Sbjct 2377 TCTGTCTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGCTTGACC 2436 Query 62960 CTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63019 ||| || | || || || || | ||| ||||| || ||||| | |||| Sbjct 2437 CTCCCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCC 2496 Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || || || || | |||||||||| ||||| ||| || ||| |||| ||| Sbjct 2497 AGCCCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTCTTC 2556 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 63138 || || || ||||| ||||| | || || || || ||||||| ||| || ||||| || Sbjct 2557 ATGAACAGGTCAGGGATCCACA-TGCCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTT 2615 Query 63139 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 ||| || ||||| || || || ||||| | | | |||| | ||||| || || | ||| Sbjct 2616 TCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTA 2675 Query 63199 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63258 ||||| | | || || | ||||| || ||||| || | || | || || || || Sbjct 2676 CATGGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTGCCGTATTGTT 2735 Query 63259 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCT 63318 |||||||||| ||| || | | || ||||| | || ||||| || | || ||||| Sbjct 2736 GTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCT 2795 Query 63319 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63378 || | | | || || | | | ||| || || || || || ||||| | Sbjct 2796 CCCCGTTGATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAG 2855 Query 63379 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 63438 |||||| | || || || || |||||||| || || || || || ||||| || | Sbjct 2856 GGCGCATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAA 2915 Query 63439 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63498 || ||||| |||| || | | | | ||||| || || || | |||||||| ||||| Sbjct 2916 GAAGCAGCTGGACAGCTGTGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTG 2975 Query 63499 AGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63558 || ||||| || || || || || || || ||||| || ||| ||| ||||| || Sbjct 2976 GGTGAACCACTTCTCCGACAGCAGGTTATAAGTCTCGATGACTGCGTCAATATCATTTTC 3035 Query 63559 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63618 ||| || || || | || ||||| | ||||||||| || | || | | ||| ||| Sbjct 3036 ATGGATCCCAACAGACACTCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTT 3095 Query 63619 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63678 ||| ||||||| |||||| |||| ||| || || ||||| ||||||| || || || Sbjct 3096 TATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATC 3155 Query 63679 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT 63738 || ||| |||| || |||||||||| || |||||| | | | | ||| | Sbjct 3156 TCTGTCGAAAATTATGGCCGAGTTGAGGCGGTC------TTTGTTCTCAAGAACGATGTT 3209 Query 63739 AA-----TACTT-GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAA 63792 | | ||| || || || ||| | || | | |||| || |||| |||||| | Sbjct 3210 GAGTGTCTGCTTGGAGATCATGGGAGAGTGCTGTCTATTTAATGGGTTGATGTAGTTGTA 3269 Query 63793 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGC 63852 | ||||||||||| ||||| || | || || || |||||||| || || || || || Sbjct 3270 CAGGTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTGGAGACAGC 3329 Query 63853 TATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTC 63912 || | || || || ||||| || || || |||| || || |||||| | || || Sbjct 3330 GATCCGCGCAGCGAGGATGGCGTAGTCGGGGTGTTTAGTCGTGAGAGTGGCGGTGATCTC 3389 Query 63913 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTT 63972 || ||||| ||||| | || || || || || ||| | || | || ||||| ||||| Sbjct 3390 TGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCACTGTACAAACCCTGGATCACCTT 3449 Query 63973 CATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAAT 64032 ||| | || | ||||| | |||| ||| | || || || | || || Sbjct 3450 CATCGTAATCTGGGCCGGATCCACGAAGTCAGAGTTAAGTCCGTAGCACAGCTTCTGGAT 3509 Query 64033 ACGAGATGTGATTTTATCAAACATGACATTTTCCTTGTATCCAT 64076 |||||| ||||||||||| ||||||||| |||| | ||||| Sbjct 3510 ACGAGAGGTGATTTTATCGAACATGACACGCTCCTGGCGTCCAT 3553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632327565562800