Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq137229 95.1 1e-14 >seq137229 Length=11157 Score = 95.1 bits (104), Expect = 1e-14 Identities = 186/271 (69%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 129580 GGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTAT 129639 |||||| |||| | || || || ||||| || |||||||| | | ||| || ||| || Sbjct 2113 GGATAGAAGTTTACTTCAATGATCTTGTTCAAGTTCTTGACGATTACTTTGGTCACGGAT 2172 Query 129640 TTTAACATTTCAAAATTGTAC-TCGCCTACATCGATGTCG-ACAAATTGATTGACACAAA 129697 || ||||||| | || || || || | || || ||| |||| | | Sbjct 2173 GCTAGTTTTTCAAAGTCAAACGTCTGCT-CAGGGGTGACGTACATGTTGAGCGCGA---- 2227 Query 129698 TCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGC 129757 | ||||||| |||||||||||| |||| | | |||| || |||||||| | || Sbjct 2228 TTGAGGCCAGATTGCAGACGGCTACCTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGC 2287 Query 129758 ACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCAT 129817 | | || || || |||||||||| || || || || || ||| |||||| || | Sbjct 2288 AGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGT 2347 Query 129818 CTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 ||||||||| |||||| ||||| || ||||| Sbjct 2348 CTTTGTACAGCATGTATGGCGTACCAGTTTC 2378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418885523663545