Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq137229 123 5e-23 seq84165 87.8 4e-12 >seq137229 Length=11157 Score = 123 bits (136), Expect = 5e-23 Identities = 473/729 (65%), Gaps = 23/729 (3%) Strand=Plus/Plus Query 293527 TACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCA 293586 ||||||| ||| ||||||||| | ||||| || || | || | |||||| ||||| Sbjct 1870 TACTGCAGGATGCCCTTGCTGACGGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCA 1929 Query 293587 TCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646 | | || ||| ||||| | ||| || |||||||| ||| ||||||| | | Sbjct 1930 GCGGCCAGAATGCAGCTCGCCTCCAGAGCGGCGTAGTAAATGGTCTCAAAGATCTGAATG 1989 Query 293647 TTGAGCTTGCGAGCCTGCTCAGAG---TCAAACGGCATCTTCAGCTGGAAGAACACATCC 293703 || ||| |||| | ||| | ||||| || || ||| ||| |||| Sbjct 1990 TTCAGCAGCTGAGCTT---CAGGGCTTTCAAATGGGTAACGCATGAGGATGAAGGCATCT 2046 Query 293704 TGCAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCG 293763 || ||| |||||||| | || | || | | ||||||||| | ||||||| || Sbjct 2047 GCCAAACCTTGTACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCA 2106 Query 293764 GGAACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTTCTTCGTGAGAACCTTGA-C 293822 || || | ||| | || |||||| || ||| || |||||| || || ||| | Sbjct 2107 GGCACAGGATAGAAGTTTACTTCAATGATCTTGTTCAAGTTCTTGACGATTACTTTGGTC 2166 Query 293823 ATGCTTGCGGAGGTCCTCAAAGTCAAA----TGCATCATTCTTGACATAGTTCTTGAGCA 293878 | | ||| || | ||||||||||| ||| ||| |||| || | |||||| Sbjct 2167 ACGGATGCT-AGTTTTTCAAAGTCAAACGTCTGC-TCAGGGGTGACGTACATGTTGAGCG 2224 Query 293879 CGAT-GCTACC-GATGACACACACTGCAGTCTCCTCCTTCGAGGTGTACTCGACAATCTC 293936 |||| | || ||| || || || ||| || | |||||| || ||||| || Sbjct 2225 CGATTGAGGCCAGATTGCAGACG--GCTACCTCGTCGTGGCTGGTGTATTCAACAATTTC 2282 Query 293937 AGCACAGAGGTTACTGCCCTTGATGGTGCCCGCATTAGACTGCATGTTCTTGGCATTGAC 293996 | |||||||| ||| ||||||||||||| ||| || || |||| ||| Sbjct 2283 TGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCA 2342 Query 293997 ACTGTCTTTGTTGAGGACATATGGCATACCCGTTTCAATCTGAGTGGTGACCATGGTGTT 294056 |||||||| || | |||||| |||| ||||| |||| | | |||| | Sbjct 2343 GGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCAATAATGGCATG 2402 Query 294057 CCAGACATCGCGAGCCTTCACCACGCGCTTTGCCTTCCCCTCAGACTCATACTTGGTGTA 294116 ||| || | ||||||||||||| ||||| || |||| || |||||| |||||| Sbjct 2403 CCACACCTGTTGAGCCTTCACCACACGCTTGACCCTCCCGTCCTTCTCATAGGAGGTGTA 2462 Query 294117 AAGCTCTTCGTATTCCTTGCCATATACATCAGACAGGCCAGGGCACTCGTGAGGGTCA-A 294175 |||| ||| | |||| || | || ||| || |||||||||| ||| || | Sbjct 2463 GAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGT-TGGGACACA 2521 Query 294176 GTAGAGACCA--CTGGGCATCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCACAT 294233 |||||||| || || | ||| || | ||||||||| || ||| || |||||| Sbjct 2522 TCAGAGACCAGTCTTGG--TTGCCCTCTACTCTCTTCATGAACAGGTCAGGGATCCACAT 2579 Query 294234 TGCGTAAAA 294242 |||| || Sbjct 2580 GCCGTAGAA 2588 >seq84165 Length=6621 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 4725 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 4783 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 4784 TCGAGTCCCGGCAGAGA 4800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1025667931696813