Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq137229 457 2e-123 seq51583 123 5e-23 seq101000 98.7 2e-15 seq55784 95.1 2e-14 >seq137229 Length=11157 Score = 457 bits (506), Expect = 2e-123 Identities = 974/1439 (68%), Gaps = 48/1439 (3%) Strand=Plus/Plus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCC-CAAGCGCTC 244068 || || |||||| |||| |||||| | ||| | ||| ||||||| || | | || Sbjct 1579 GACCCGTTGTGGCCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGTCCTCTCTCTGTC 1638 Query 244069 CAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTG 244128 || | | || ||| || || || | |||||||||||| || || || | ||| Sbjct 1639 AAGT-CTTTGAGCAGATGAGGATTGACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGT 1697 Query 244129 GTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCT 244188 ||||| ||||||| || || |||||| ||| |||||||||| ||||| || ||| Sbjct 1698 GTAGATGTTGCTGGTGTAGGGTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGA 1757 Query 244189 CGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAG 244248 || || ||||| || | || ||||||||||||||||||||||||| | ||| Sbjct 1758 GGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTC 1817 Query 244249 TCTGAGCTCGTTCCAGTCCCACATGCCCGAGAG-GTCCTCGCGTTTGAGGCCCCACATGT 244307 | ||| ||||||||| || | | | | | ||| || | |||||||| Sbjct 1818 CTTCAGCAGTTTCCAGTCCAACCGGTCGGTGGGCGTCTTCTC----------CCACATGT 1867 Query 244308 CAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGC 244367 | ||||||| | |||||||||||||| ||| ||||| ||| |||||| ||| || Sbjct 1868 CGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCTTCGTACGTCTCGTAGGGGCCGA-GC 1926 Query 244368 GCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATC 244426 | | |||||| | |||||| | || || ||||||||||| |||||||| |||||| Sbjct 1927 TCAGCGGCCAGAATGCAGCTCGCCTCCAGAGCGGCGTAGTAAATGGTCTCAAAGATCTGA 1986 Query 244427 TTGTTCATGTCGCGGGCCTTGCCGCAGGTG-----AAGGGGATGCCCATCATCATGAAGA 244481 |||||| | || | ||| |||| || ||| | ||| | |||||| Sbjct 1987 ATGTTCA-GCAGCTGAGCTT----CAGGGCTTTCAAATGGGTAACGCATGAGGATGAAGG 2041 Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG 244541 | || |||| || || || || || || || || ||||| ||||||||||| | | Sbjct 2042 CATCTGCCAAACCTTGTACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTG 2101 Query 244542 CTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TG 244600 |||| ||||| || || ||||| | || || | |||||| | ||| | ||| | | Sbjct 2102 CTTCAGGCACAGGATAGAAGTTTACTTCAATGATCTTGTTCAAGTTCTTGACGATTACTT 2161 Query 244601 CGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATC 244660 || | ||| || || | |||||| || | | ||| | | || Sbjct 2162 TGGTC-ACGGATGCTAGTTTTTCAAAGTCAAAC------GTCTGCTCAGGGGTG------ 2208 Query 244661 CTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG 244720 || || |||||| |||| |||||| ||||||||||| ||||| || | || Sbjct 2209 ---ACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTCGTGGCTG 2265 Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||| | ||||| || ||||||||||| ||| |||||||||||||||| | |||||| Sbjct 2266 GTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGG 2325 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 ||| ||| |||||||||||| ||||| |||||| | ||| || || || |||| Sbjct 2326 TTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGG 2385 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAG-CCTTGCCCTC 244899 | | | | | | ||| | | |||||| ||| | || | || | || || Sbjct 2386 GACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACAC-GCTTGACCCTCCCGTC 2444 Query 244900 TGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGG 244959 ||| ||| |||||| || || ||||| |||||| |||||| || ||||| Sbjct 2445 CTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGG 2504 Query 244960 GCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGA 245018 |||| || ||| ||||| ||| ||| || | | ||| || |||| |||||| | Sbjct 2505 GCACT-CGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTCTTCATGAACA 2563 Query 245019 GGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGT 245078 |||| |||||||| | | | | ||| ||||| |||| |||||||| ||| || |||| Sbjct 2564 GGTCAGGGATCCACATGCCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCCGTGT 2623 Query 245079 TCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGA 245138 ||||| ||||||||| |||||||| || || | |||||||||||| | ||| | |||| Sbjct 2624 TCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTACATGGCGA 2683 Query 245139 GGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATG 245197 ||| ||||| | |||||| || ||||||||||| | | | || |||| | | Sbjct 2684 AGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTGCCG-TATTGTTGTAAACT 2742 Query 245198 CGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTG 245257 | ||| | || || | ||||| |||| |||||||||||| |||||| ||| | Sbjct 2743 CTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGTT 2802 Query 245258 CCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAG 245317 |||| | ||||| || || || | || || || |||||||||||||||||| Sbjct 2803 GATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGCGCAT 2862 Query 245318 CTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAG 245377 ||| | |||||| ||||| || |||||||| |||||| ||||| |||||| Sbjct 2863 TGCTTCAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAG 2922 Query 245378 GAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 ||||||||| ||| | | | | | |||||| || || || ||||||||| || Sbjct 2923 CTGGACAGCTGTGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGGTGAA 2981 >seq51583 Length=2687 Score = 123 bits (136), Expect = 5e-23 Identities = 105/127 (83%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| | ||||| ||||| ||||||||||| || |||| ||||||||||||| Sbjct 967 TGGTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCT 908 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | |||||| || || |||||||| ||||| ||||||||||| Sbjct 907 GGCTGAAGAAGAGAGGCCT-GATGCCTGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 849 Query 42825 GACGAGG 42831 ||||||| Sbjct 848 GACGAGG 842 Score = 102 bits (112), Expect = 2e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||| Sbjct 179 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGCAAGACCAACTTCTTTGAGAAGCG 120 Query 43130 CGTCGCCGACTACCAG 43145 ||| | ||| |||||| Sbjct 119 CGTGGGCGAGTACCAG 104 >seq101000 Length=9675 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||| ||| | || || ||||||||||||||||| ||| | ||||| |||||| ||| Sbjct 773 GTAGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCTGGCTCATTCGCTGCCATCTATTGG 832 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 |||||| ||| | | ||||| || || |||| ||| ||||| || || |||||||| Sbjct 833 CTCAAGAAGAGAGGATTAATGCCTGGCCTTACCTACTCCAACGAGCTGATTAGCAGGGAT 892 Query 42828 GAGG 42831 |||| Sbjct 893 GAGG 896 >seq55784 Length=9571 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || || || | ||| ||||| ||||||| || | ||| ||| Sbjct 1652 ACCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCAATG 1711 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||| ||||| ||||| || ||| || || ||||| || | || |||||| Sbjct 1712 GACTCGTTGTTTCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATTGGTGCCAAGAGCAGA 1771 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| || ||||| Sbjct 1772 CTGTTCCTCACACCATGCCT 1791 Score = 95.1 bits (104), Expect = 2e-14 Identities = 155/217 (71%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTT 244380 || |||||||| || ||| ||||||| ||| || ||| || | | |||||| | Sbjct 2048 CCTTTGCTGACAGGAGAGCCAGCGTAGGTTTCGTAAGGGCCGA-GCTCCGCCGCCAGCAT 2106 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC---ATCTTGTTCATGTC 244437 ||||| | || ||||| |||||||| |||||||| |||||| || ||| || | Sbjct 2107 GCAGCTGGCCTCCAGGGCAGCGTAGTAAATGGTCTCAAAGATCTGGATGTTGAGCAACT- 2165 Query 244438 GCGGGCCTTGCCGCAGGTGAAGGGGATGCC-CATCATCATGAAGACGTCGGCCAGTCCCT 244496 |||||| || | || ||||| | ||| | |||||| | || ||||| |||| Sbjct 2166 --GGGCCTCTGGGCTT-TCAAAGGGATAACGCATGAGGATGAAGGCATCAGCCAGACCCT 2222 Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 |||| ||||| || || || ||||||||||||||||| Sbjct 2223 GCACACCGATTCCAATCGGCCTGTGTCGCTTGTTGGA 2259 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | | ||||||| || ||||| ||||| || || ||| | |||||||| Sbjct 2599 CACCTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGT 2658 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 |||||| | ||| || ||| ||| ||||||||||||||||||||||||| Sbjct 2659 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATG 2710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942395124301680