Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq137229 114 2e-20 seq55784 89.7 6e-13 seq51583 89.7 6e-13 >seq137229 Length=11157 Score = 114 bits (126), Expect = 2e-20 Identities = 822/1310 (63%), Gaps = 52/1310 (4%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| || || | | |||| ||||| |||| ||| |||||||||||| Sbjct 1699 TAGATGTTGCTGGTGTAGGGTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 1758 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 ||||||||||| || |||| || || ||||| | | || | | || ||| Sbjct 1759 GCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 1818 Query 114062 TTGAGGGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAAC 114115 || || | |||||| || | || || | |||||| |||| || || Sbjct 1819 TTCAGCAGTTTCCAGTCCAACCGGTCGGTGGGCGTCTTCTCCC------ACATGTCGTAC 1872 Query 114116 TGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCC---CTCAACC 114172 || ||||| || | | | | || || || || | |||||||| ||||| |||| | Sbjct 1873 TGCAGGATGCCCTTGCTGACGGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCG 1932 Query 114173 TCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA 114232 || ||| | |||||||||| || || |||| || || |||||||| || || Sbjct 1933 GCCAG-AATGC--AGCTCGCCTCCAGAGCGGCGTAGTAAATGGTCTCAAAGATCTGAATG 1989 Query 114233 TTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCG 114292 |||| || || || | ||||| | | || | || || |||| || Sbjct 1990 TTCAGCAGCTGAGCTTCAGGGCTTTCAAATGGGTAACGCATGAGGATGAAGGCATCTGCC 2049 Query 114293 AGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC 114352 | |||||| ||||| | || ||||| | || | | | || ||||| || | Sbjct 2050 AAACCTTGTACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGC 2109 Query 114353 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 114412 || ||||| || || || || | | | || | || ||| || || || || | Sbjct 2110 ACAGGATAGAAGTTTACTTCAATGATCTTGTTCAAGTTCTTGACGATTACTTTGGTCACG 2169 Query 114413 TCATGA-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGAAG 114468 ||| || ||||| | ||||| |||| ||| |||| ||| | || Sbjct 2170 G-ATGCTAGTTTTTCAAAGTCAAAC------GTCTGCTCAGGGGTGACGTACATGTTGAG 2222 Query 114469 GGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTC 114528 |||||||| |||||||| || || | ||| || | ||||| || | |||||| Sbjct 2223 CGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTCGTGGCTGGTGTATTCAACAATTTC 2282 Query 114529 CGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 114586 || || | || || ||| | |||||||||| |||| || || ||| ||| Sbjct 2283 TGTGCAGAGGTTGCTGGACT--TGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTG 2340 Query 114587 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 114646 || || || ||||| |||||||||||||| || || || || ||||||| | ||| || Sbjct 2341 CAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCAATAATGGCA 2400 Query 114647 TTCCAGACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGT 114705 | ||| || | | | || || || ||| | | ||| |||| ||| || || Sbjct 2401 TGCCACACCTGTTGAGCCTTCACCACACGC-TTGACCCTCCCGTCCTTCTCATAGGAGGT 2459 Query 114706 GTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCA 114765 |||||| ||||||||| || ||| | ||| ||||| || || | || || Sbjct 2460 GTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACA 2519 Query 114766 GAAGAGAGACCA---TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCA 114822 | |||||||| ||| | |||| || | ||||||||| ||||| |||||||| Sbjct 2520 CATCAGAGACCAGTCTTGGTTGC---CCTCTACTCTCTTCATGAACAGGTCAGGGATCCA 2576 Query 114823 GAGAGCTGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 114881 | | |||| || || | | | ||| || | | ||| || || || || Sbjct 2577 CATGCCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCT 2635 Query 114882 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----C 114937 ||| ||||| | | ||| |||||| || || ||||||| |||| | ||| | Sbjct 2636 CCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTACATGGCGAAGGCCCCGGGTC 2695 Query 114938 TTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGA 114997 | | ||| |||||| ||||| | || || || | || | ||||| || Sbjct 2696 TCTTG-TTCCCACCCTGGTCCACATAACGTGCCGTATTGTTGTAAACTCTCAGCATGGGG 2754 Query 114998 ATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA--CAT 115055 | || || | || | ||| || || || ||| | | | ||||| || Sbjct 2755 ACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGTTGATCTGATGCAG 2814 Query 115056 CATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGAC 115115 | || | || ||| || || || || |||| ||||| | ||||| | | | | Sbjct 2815 C--TGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGCGCATTGCTTCAAGG 2872 Query 115116 TGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTT 115175 || ||||||| || ||||| ||| | || | |||| | ||||||||| |||| | Sbjct 2873 TGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCT 2932 Query 115176 GTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 ||||||| || || ||||||||||| || || | |||||| ||||| Sbjct 2933 GTGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGGTGAAC 2982 >seq55784 Length=9571 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||||| | |||| ||||| |||| ||| ||||| ||||| Sbjct 1685 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCGTTGTTTCCCAGGATCTGGGCAGTGGAA 1744 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 ||||||||||| ||||||| ||| || ||||| Sbjct 1745 GCTGTGGGCATTGGTGCCAAGAGCAGACTGTT 1776 >seq51583 Length=2687 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 842 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGGCCTCTCTTCT 901 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 ||| |||||| || | ||| ||||| |||||||||||||||||||| Sbjct 902 TCAGCCAGAAGATGGAGGCAAAGGAACCAGAGAAGAAGATTCCCTCCAC 950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596123850544440