Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq137229 156 4e-33 >seq137229 Length=11157 Score = 156 bits (172), Expect = 4e-33 Identities = 430/655 (66%), Gaps = 8/655 (1%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||||| |||||| ||||||||| ||| ||||| | ||||| | |||| Sbjct 3146 TACAACTTCTTTGGCTTCAAGACTCTGGAGCGGTCCTACCTGTTGAAGATAAACGGCAAA 3087 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||| ||||| || |||| ||||| || | | ||||| || | | || Sbjct 3086 GTGGCCGAGCGGCCGCAGCACATGCTCATGCGAGTGTCTGTTGGGATCCATGAAAATGAT 3027 Query 93838 AT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGG---GACAAGAGGTATACCATGGC 93893 || | || | || | | ||| | || ||| | || ||| ||| ||| || Sbjct 3026 ATTGACGCA-GTCATCGAGACTTATA---ACCTGCTGTCGGAGAAGTGGTTCACCCACGC 2971 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | | || || || |||||||| || ||| ||||||| |||| || ||| || | Sbjct 2970 CTCTCCTACGCTCTTCAACGCAGGAACCAATAGGCCACAGCTGTCCAGCTGCTTCTTGCT 2911 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 | | || | |||| |||| || || | ||||| | | ||| | || || ||| Sbjct 2910 CGCCATGAAAGACGACAGCATCGAAGGCATCTACGACACCTTGAAGCAATGCGCCCTCAT 2851 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || | || || || ||||| | ||| | | | | | | ||| ||| Sbjct 2850 CTCCAAGTCAGCTGGAGGCATCGGTGTGGCCGTCAGCTGCATCAGATCAACGGGGAGCTA 2791 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| || ||||| |||| ||||||||| |||||||| ||||| | || | |||||| Sbjct 2790 CATTGCTGGCACCAACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTTTACAACAA 2731 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 |||| || || |||||||||||||| | ||| || | ||||| | || || Sbjct 2730 TACGGCACGTTATGTGGACCAGGGTGGGAACAAGAGACCCGGGGCCTTCGCCATGTACCT 2671 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||||||||| || ||| | ||| | || ||| |||||| || || || Sbjct 2670 AGAGCCCTGGCACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGA 2611 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 | |||| ||||||||||| ||||||| | ||| | || ||||| || ||||| | Sbjct 2610 GGAGCAGAGAGCCAGAGACCTTTTCTACGGCATGTGGATCCCTGACCTGTTCATGAAGAG 2551 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || ||| ||| | |||| ||| | |||||||| || || ||||| ||| Sbjct 2550 AGTAGAGGGCAACCAAGACTGGTCTCTGATGTGTCCCAACGAGTGCCCCGGGCTG 2496 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 ||| ||||| |||| ||| ||||| ||||||| |||||||| |||||||| || || Sbjct 1806 CAAGCACGGCGTGAGGAACAGTCTGCTGCTGGCCCCGATGCCCACAGCCTCCACCGCCCA 1747 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 |||||| |||||||||||||| ||||||||| |||| |||| | |||| | | |||| Sbjct 1746 GATCCTGGGCAACAACGAGTCCATCGAACCCTACACCAGCAACATCTACACCCGCAGGGT 1687 Query 95193 GCTCGCCGGGGAATT 95207 ||| | || || || Sbjct 1686 CCTCTCTGGAGAGTT 1672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493704731900280