Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq137229 123 2e-23 >seq137229 Length=11157 Score = 123 bits (136), Expect = 2e-23 Identities = 893/1431 (62%), Gaps = 50/1431 (3%) Strand=Plus/Plus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | ||||| | ||| ||||| ||||| || || || || |||| || || Sbjct 1705 TTGCTGGTGTAGGGTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTG 1764 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 ||||| |||| || || | |||| || ||||||| || | ||||||| | Sbjct 1765 GGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGC 1824 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 | ||| ||| || | | | || ||| | ||||||||||||||| | | || Sbjct 1825 AGTTTCCAGTCCAACCGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGCAGGATGCCC 1884 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGCA 153313 ||| ||||| ||| | |||| |||| |||| || | |||||| ||| Sbjct 1885 TTGCTGACGGGAGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCAGCGGCCAGAATGCA 1943 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| ||||| || ||| | ||||| ||||| || ||| || | || || | || Sbjct 1944 GCTCGCCTCCAGAGCGGCGTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGC 2003 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 ||| ||| || | || |||| || | ||||| || |||| ||| || | ||| Sbjct 2004 TTCAGGGCTTTCAAATGGGTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACC 2063 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTG-----CTGCGCCTCGCGCTCGCTATGGGATAG 153488 | || || || | || || |||| || || || || | |||||| Sbjct 2064 AATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGCACA-----GGATAG 2118 Query 153489 TGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGT 153548 || || || || ||||| | ||| || | ||||| || | | ||| Sbjct 2119 AAGTTTACTTCAATGATCTTGTTCAAGTTCTTGACGATTACTTTGGTCACGGATGCTAGT 2178 Query 153549 TTCTCGAAATCATAGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGC 153607 || || || ||| | ||| || | | ||||| || || | || || || || Sbjct 2179 TTTTCAAAGTCAAACGTCTGCTCAGGGGTGACGTAC--ATG--TTGAGCGCGATTGAGGC 2234 Query 153608 CAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT 153667 |||||| |||||||| ||| ||| | | |||| | || || || | ||||||||| Sbjct 2235 CAGATTGCAGACGGCTACCTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTT 2294 Query 153668 GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAA 153727 |||| | || ||| ||||| ||| || || ||||| || || ||||| ||||||||| | Sbjct 2295 GCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTA 2354 Query 153728 GAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT--------AAACCTATGC 153779 |||||||| || || || || || | || | || | |||| | Sbjct 2355 CAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCAATAATGGCATGCCACACCTGTTG 2414 Query 153780 AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGT 153839 || ||| | | ||| |||| || | || || |||| || ||| || Sbjct 2415 AG--CCTTCAC---CACACGCT--TGA-CCCTCCCGTCCTTCTCATAGGAGGTGTAGAGC 2466 Query 153840 CGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGC 153899 |||||||| || || |||| ||| | || ||||| |||| | ||||||||||| Sbjct 2467 TTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATCAGA 2526 Query 153900 GACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTAC 153959 ||||| | || | | | || | ||||||||| || || | ||| | |||| Sbjct 2527 GACCAGTCTTGGTTGCCCTCTACTCTCTTCATGAACAGGTCAGGGATCCACATGCCGTAG 2586 Query 153960 ATGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGC 154017 | ||||| | || | ||| |||||| ||| |||| ||||| | || | | Sbjct 2587 AAAAGGTCTCTGGCTCTCTGC--TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGT 2644 Query 154018 TATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTACGCTTTC 154074 | | | || ||||||||| || | ||| | ||| | ||| || | | || | Sbjct 2645 CAAACACATCAAAGTGCCAGGGCTCTAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTCC 2704 Query 154075 CGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGC 154134 | ||||| || || | || || |||||||| | || | || |||||| | || ||| Sbjct 2705 CACCCTGGTCCACATAACGTGCCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCGT 2764 Query 154135 TTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGC-----AC 154189 | | | |||||||||| | || | ||| || || | |||||| || Sbjct 2765 TGGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCC-----CGTTGATCTGATGCAGCTGAC 2819 Query 154190 GTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTA 154249 | || || ||||| || | |||| || ||| ||||| | || || ||| Sbjct 2820 GGCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGCGCATTGCTTCAAGGTGTCGTA 2879 Query 154250 GATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAAT 154309 |||||| |||||||| ||||| | | |||||||||| || ||| || || | Sbjct 2880 GATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGTGGCCT 2939 Query 154310 GCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCAT 154369 ||||| || ||||| || ||| ||||| || ||| || | || || Sbjct 2940 ATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAG 2999 Query 154370 GCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCAT 154429 | || || |||||| | | || ||||||| | || || || | | || ||||| Sbjct 3000 GTTATAAGTCTCGATGACTGCGTCAATATCATTTTCATGGATCCCAACAGACACTCGCAT 3059 Query 154430 GAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATA 154480 ||||||||||||||| || ||||| ||| | || |||||||| || || Sbjct 3060 GAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTTATCTTCAACAGGTA 3110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495240763206960