Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq137229 118 1e-21 seq55784 91.5 1e-13 >seq137229 Length=11157 Score = 118 bits (130), Expect = 1e-21 Identities = 473/725 (65%), Gaps = 30/725 (4%) Strand=Plus/Plus Query 146065 TTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGC 146124 ||||| | ||||||||| || | ||| || | | || | |||||||||| | || Sbjct 1660 TTGACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGT 1719 Query 146125 TCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACC 146184 |||| ||||||||||| || || ||||| || || | || || ||||| |||| | Sbjct 1720 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGC 1779 Query 146185 AGCAAAGAGTTTCTCACGCCGTGTCTTTGA-ATCTTTTCCC---GTAGTTTGGACCAATT 146240 |||| | ||| ||||||||||| ||| | ||||| ||| | ||||| | | | Sbjct 1780 AGCAGACTGTTCCTCACGCCGTG-CTTGGCGATCTTCTCCTTCAGCAGTTT----CCAGT 1834 Query 146241 CCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCC---GCGGAA 146297 ||| | | || ||||| | | | ||||||| |||| |||| || || Sbjct 1835 CCA--ACCGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGAC 1892 Query 146298 CAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTT-GGCCAGTTCGCAGCTAG 146356 | | || | |||||| || || || ||| | || |||||| |||||| | Sbjct 1893 GGGAGAGCCTT---CGTACGTCTCGTAGGGGCCGA-GCTCAGCGGCCAGAATGCAGCTCG 1948 Query 146357 CTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTA-GTTGACGCTCCTG-GCCTC 146414 | |||||||| | |||| |||||||| |||| || | ||| | || ||| || || Sbjct 1949 CCTCCAGAGCGGCGTAGTAAATGGTCTCAAAGATC-TGAATGTTCA-GCAGCTGAGCTTC 2006 Query 146415 CTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGA 146473 ||| || | ||| || || | || | ||||| || || | ||| |||| || | Sbjct 2007 AGGGCTTTCAAATGGG-TAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAA 2065 Query 146474 CACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGC 146533 || | || | ||| |||||| ||| | || | | |||||| ||| Sbjct 2066 TTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGCACAGGATAGAAGTTTA 2125 Query 146534 TGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTC-AGCAGGACA 146592 || ||||||||||| | || |||| | ||| |||| ||| | || || Sbjct 2126 CTTCAATGATCTTGTTCAAGTTCTTGACGATTACTTTGGTCACG-GATGCTAGTTTTTCA 2184 Query 146593 TAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTA 146652 ||||||| || | | | | ||||| || |||||| ||||| ||||||| || Sbjct 2185 AAGTCAAACGTCTGC---TCAGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTG 2241 Query 146653 CATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCAC 146712 || ||||| |||||| | | | || | ||||| || | ||||||||||||| || Sbjct 2242 CAGACGGCTACCTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGAC 2301 Query 146713 TTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATG 146772 |||||| |||||| ||| | ||||| || | |||||||| ||| ||||| |||||| Sbjct 2302 TTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATG 2361 Query 146773 TACGG 146777 || || Sbjct 2362 TATGG 2366 >seq55784 Length=9571 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| || ||||| | ||| || |||||| | |||||| |||||| ||| | ||||| Sbjct 2618 TACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTG 2677 Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 || | ||||||||| |||||||||||||||||| ||| |||||||| Sbjct 2678 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCGGTTTC 2727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474521904334320